View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20097_low_2 (Length: 556)
Name: NF20097_low_2
Description: NF20097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20097_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 399; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 10 - 538
Target Start/End: Original strand, 35035559 - 35036088
Alignment:
| Q |
10 |
ataatactttatggttttgaatgaagatgttgtgtctaagtcacttgtgtgatttattttcagtgataatctttagtattttaggatccc-aatggtttg |
108 |
Q |
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| T |
35035559 |
ataatactttatggttttgaatgaagatgttgtgtccaagtcacttgtgtgatttatttttagtgataatctttggtattttaggatccccaatggtttg |
35035658 |
T |
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| Q |
109 |
ccaaccgaaagctcaaatatctttcttaaatcactttcccaacttatattgttctttaacaaatcatttaaatcataaataaaatgttcaagtaaatgag |
208 |
Q |
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| T |
35035659 |
ccaaccgaaagctcaaatatctttcttaaatcactttcccaacttatatagttctttaacaaatcatttcaatcataaataaaatgttcaagtaaatgag |
35035758 |
T |
|
| Q |
209 |
agaagagagaaacgcacgttatgtt-atactagttcacattcaacttagctgccacctctagtcgcctcccaagagtgattatgcttaaatacattcaaa |
307 |
Q |
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|||||||||||||| |||||||||| ||||||||||||||||||||||| ||| |||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
35035759 |
agaagagagaaacgtacgttatgtttatactagttcacattcaacttagttgctacctctagtcgcctcctaagagtgattatgcttaaatacattcaaa |
35035858 |
T |
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| Q |
308 |
taattaatccattatagtcaatcaattacaatcactctattttatgccaacacaatatttactggattttcaacgaggtatctgattcccacatcttttg |
407 |
Q |
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| T |
35035859 |
taattaatccattatagtcaatcaattacaatcactctattttatggcaacacaatatttactggattttcaataaggtatctgattcccacatcttttg |
35035958 |
T |
|
| Q |
408 |
caacttattgtctgacttcaaaaaacactgagannnnnnnnnnnnnnnnngaccttaacttggtcgaaatctaccccgtcttttcaaagattctaactca |
507 |
Q |
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| T |
35035959 |
caacttattgtctgacttcaaaaaacgttgaga-ttttttttttaaaaaagaccttaacttggtcgaaatctaccccgtcttttcaaagattctgactca |
35036057 |
T |
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| Q |
508 |
actgagtcctttgaggagtcaagtgtttaat |
538 |
Q |
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| T |
35036058 |
actgagtcctttgaggagtcaagtgtttaat |
35036088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 484 - 538
Target Start/End: Complemental strand, 25656259 - 25656205
Alignment:
| Q |
484 |
cgtcttttcaaagattctaactcaactgagtcctttgaggagtcaagtgtttaat |
538 |
Q |
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|||||| ||||||||||| |||| ||||||||||||||||||||| | |||||| |
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| T |
25656259 |
cgtcttctcaaagattcttgctcacctgagtcctttgaggagtcaaatatttaat |
25656205 |
T |
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