View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20097_low_5 (Length: 279)

Name: NF20097_low_5
Description: NF20097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20097_low_5
NF20097_low_5
[»] chr4 (1 HSPs)
chr4 (12-266)||(19219564-19219818)
[»] chr6 (10 HSPs)
chr6 (91-265)||(29364935-29365110)
chr6 (92-267)||(24258171-24258347)
chr6 (92-263)||(29899062-29899234)
chr6 (91-265)||(29346408-29346583)
chr6 (119-263)||(29355056-29355200)
chr6 (127-267)||(29888119-29888258)
chr6 (138-263)||(24262678-24262804)
chr6 (92-267)||(24271108-24271282)
chr6 (75-145)||(29916584-29916654)
chr6 (138-224)||(29916468-29916556)
[»] chr2 (1 HSPs)
chr2 (13-77)||(36381202-36381266)


Alignment Details
Target: chr4 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 12 - 266
Target Start/End: Original strand, 19219564 - 19219818
Alignment:
Q  12 aagaatcaaactctatgatgctgatccaaatgttctacttgctttctcaaaatcaaatgttgaatttgttataggaattggaaatgagcatttacaaaat 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19219564 aagaatcaaactctatgatgctgatccaaatgttctacttgctttctcaaaatcaaatgttgaatttgttataggaattggaaatgagcatttacaaaat 19219663  T
Q  112 atgacaaacccttctaaagctcaaaattggattcaacatcatgttctaccttacctttcacaaaccaaaataaattgcataactgttggaaatgaagtat 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19219664 atgacaaacccttctaaagctcaaaattggattcaacatcatgttctaccttacctttcacaaaccaaaataaattgcataactgttggaaatgaagtat 19219763  T
Q  212 tcaatagcaatgatactcaattaattttgaatcttctaccttcaatgcaaaatgt 266  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19219764 tcaatagcaatgatactcaattaattttgaatcttctaccttcaatgcaaaatgt 19219818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 72; Significance: 8e-33; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 91 - 265
Target Start/End: Original strand, 29364935 - 29365110
Alignment:
Q  91 ggaaatgagcatttacaaaatatgacaaacccttctaaagctcaaaattggattcaacatcatgttctaccttacctttcacaaaccaaaataaatt-gc 189  Q
    ||||||||| || | || ||||||||| ||| ||| |||||||| | ||||||||| || ||||||| ||||||||||||||| | |||||| | || ||    
T  29364935 ggaaatgagtatctgcagaatatgacagacctttcaaaagctcatacttggattcagcagcatgttcaaccttacctttcacagatcaaaatgattttgc 29365034  T
Q  190 ataactgttggaaatgaagtattcaatagcaatgatactcaattaattttgaatcttctaccttcaatgcaaaatg 265  Q
    |||||||| |||||||| |||||||||||||||||||||||  |||| ||||| ||||| || |||||||||||||    
T  29365035 ataactgtgggaaatgaggtattcaatagcaatgatactcagataatgttgaaccttctcccatcaatgcaaaatg 29365110  T

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Target: chr6; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 92 - 267
Target Start/End: Original strand, 24258171 - 24258347
Alignment:
Q  92 gaaatgagcatttacaaaatatgacaaacccttctaaagctcaaaattggattcaacatcatgttctaccttacctttcacaaaccaaaataaatt-gca 190  Q
    |||||||| || | || ||||||||| ||| ||| |||||||| | ||||||||| || ||||||| ||||||||||||||| | |||||| | || |||    
T  24258171 gaaatgagtatatgcagaatatgacagacctttcaaaagctcagacttggattcagcaccatgttcaaccttacctttcacagatcaaaattactttgca 24258270  T
Q  191 taactgttggaaatgaagtattcaatagcaatgatactcaattaattttgaatcttctaccttcaatgcaaaatgtg 267  Q
    ||||||| |||||||| |||||||||||||||||||||||  |||| ||||| ||| | || |||||||||||||||    
T  24258271 taactgtgggaaatgaggtattcaatagcaatgatactcagataatgttgaaccttttcccatcaatgcaaaatgtg 24258347  T

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Target: chr6; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 92 - 263
Target Start/End: Complemental strand, 29899234 - 29899062
Alignment:
Q  92 gaaatgagcatttacaaaatatgacaaacccttctaaagctcaaaattggattcaacatcatgttctaccttacctttcacaaaccaaaataaatt-gca 190  Q
    |||||||| || | || ||||||||| ||| ||| |||| || || ||||||||| || ||||||| |||||| ||||| |||| |||||||| || |||    
T  29899234 gaaatgagtatctgcagaatatgacagacctttcaaaagatctaacttggattcagcaccatgttcaaccttatctttcgcaaatcaaaataactttgca 29899135  T
Q  191 taactgttggaaatgaagtattcaatagcaatgatactcaattaattttgaatcttctaccttcaatgcaaaa 263  Q
    ||||||| |||||||| |||||||||||||||||||||||  |||| ||||| ||||| ||  ||||||||||    
T  29899134 taactgtgggaaatgaggtattcaatagcaatgatactcagataatgttgaaccttctcccaccaatgcaaaa 29899062  T

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Target: chr6; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 91 - 265
Target Start/End: Original strand, 29346408 - 29346583
Alignment:
Q  91 ggaaatgagcatttacaaaatatgacaaacccttctaaagctcaaaattggattcaacatcatgttctaccttacctttcacaaaccaaaataaatt-gc 189  Q
    ||||||||| || | || ||||||||| ||| ||| |||||||  | |||||||||  | ||||||| ||||||||||||||||| |||||| | || ||    
T  29346408 ggaaatgagtatctgcagaatatgacagacctttcaaaagctcggacttggattcaggaccatgttccaccttacctttcacaaatcaaaatgactttgc 29346507  T
Q  190 ataactgttggaaatgaagtattcaatagcaatgatactcaattaattttgaatcttctaccttcaatgcaaaatg 265  Q
    |||||||| |||||||| ||||||||||||||||||||| |  |||| ||||| ||||| ||  ||||||||||||    
T  29346508 ataactgtgggaaatgaggtattcaatagcaatgatacttagataatgttgaaacttctcccaccaatgcaaaatg 29346583  T

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Target: chr6; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 119 - 263
Target Start/End: Original strand, 29355056 - 29355200
Alignment:
Q  119 acccttctaaagctcaaaattggattcaacatcatgttctaccttacctttcacaaaccaaaataaattgcataactgttggaaatgaagtattcaatag 218  Q
    ||||||||||| ||| |  |||||| || || ||||| | ||||||||||||| |||| ||||||| |||||||||| | |||||||| |||||||||||    
T  29355056 acccttctaaatctccagcttggatacagcaccatgtccaaccttacctttcagaaacaaaaataacttgcataactctgggaaatgaggtattcaatag 29355155  T
Q  219 caatgatactcaattaattttgaatcttctaccttcaatgcaaaa 263  Q
    |||||| |||||   ||| ||||| ||||| || |||||||||||    
T  29355156 caatgagactcagccaatgttgaaccttcttccatcaatgcaaaa 29355200  T

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Target: chr6; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 127 - 267
Target Start/End: Complemental strand, 29888258 - 29888119
Alignment:
Q  127 aaagctcaaaattggattcaacatcatgttctaccttacctttcacaaaccaaaataaatt-gcataactgttggaaatgaagtattcaatagcaatgat 225  Q
    |||||||| | ||||||||| |  ||||||| | |||||||||| |||| |||||||| || |||||||||| |||||||| ||||||||||| ||||||    
T  29888258 aaagctcagacttggattcagc--catgttcaaacttacctttcgcaaatcaaaataactttgcataactgtgggaaatgaggtattcaatagaaatgat 29888161  T
Q  226 actcaattaattttgaatcttctaccttcaatgcaaaatgtg 267  Q
    |||||  |||| ||||| ||| | || |||||||||||||||    
T  29888160 actcagataatgttgaaccttttcccatcaatgcaaaatgtg 29888119  T

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Target: chr6; HSP #7
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 138 - 263
Target Start/End: Original strand, 24262678 - 24262804
Alignment:
Q  138 ttggattcaacatcatgttctaccttacctttcacaaaccaaaataaatt-gcataactgttggaaatgaagtattcaatagcaatgatactcaattaat 236  Q
    ||||||||| |  ||||||| |||||| |||||| ||| |||||| | || |||||||||| |||||||| |||||||||||||||||||||||  ||||    
T  24262678 ttggattcagcgccatgttcaaccttatctttcataaatcaaaattactttgcataactgtgggaaatgaggtattcaatagcaatgatactcagataat 24262777  T
Q  237 tttgaatcttctaccttcaatgcaaaa 263  Q
     ||||| ||||| ||  ||||||||||    
T  24262778 gttgaaccttctcccaccaatgcaaaa 24262804  T

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Target: chr6; HSP #8
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 92 - 267
Target Start/End: Original strand, 24271108 - 24271282
Alignment:
Q  92 gaaatgagcatttacaaaatatgacaaacccttctaaagctcaaaattggattcaacatcatgttctaccttacctttcacaaaccaaaataaattgc-a 190  Q
    |||||||| || | || ||||||||| ||| ||| |||||||| | ||||||||| | |  ||||| | |||||||||| |||| |||||||| || | |    
T  24271108 gaaatgagtatatgcagaatatgacagacctttcaaaagctcagacttggattcagcct--tgttcaaacttacctttcgcaaatcaaaataactttcca 24271205  T
Q  191 taactgttggaaatgaagtattcaatagcaatgatactcaattaattttgaatcttctaccttcaatgcaaaatgtg 267  Q
    ||| ||| ||| |||| ||||||||||||||||||||||   |||| ||||| ||| | || |||||||||||||||    
T  24271206 taattgtgggagatgaggtattcaatagcaatgatactcggataatgttgaaccttttcccatcaatgcaaaatgtg 24271282  T

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Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 75 - 145
Target Start/End: Complemental strand, 29916654 - 29916584
Alignment:
Q  75 atttgttataggaattggaaatgagcatttacaaaatatgacaaacccttctaaagctcaaaattggattc 145  Q
    ||||||||||||| |||||||||||||| | || ||||||||| ||| ||| ||||||| || ||||||||    
T  29916654 atttgttataggacttggaaatgagcatctgcagaatatgacagacctttcaaaagctctaacttggattc 29916584  T

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Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 138 - 224
Target Start/End: Complemental strand, 29916556 - 29916468
Alignment:
Q  138 ttggattcaacatcatgttctaccttacctttcacaaacc-aaaataaatt-gcataactgttggaaatgaagtattcaatagcaatga 224  Q
    ||||||||  || ||||||| ||||||| ||||||||| | ||||||| || |||||||||| ||| |||| |||||||||| ||||||    
T  29916556 ttggattcggcaccatgttcaaccttacttttcacaaatcgaaaataactttgcataactgtcggagatgaggtattcaataacaatga 29916468  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 13 - 77
Target Start/End: Original strand, 36381202 - 36381266
Alignment:
Q  13 agaatcaaactctatgatgctgatccaaatgttctacttgctttctcaaaatcaaatgttgaatt 77  Q
    ||||||||||||||||||||||||||||||||||||    | |||||||| ||||||||||||||    
T  36381202 agaatcaaactctatgatgctgatccaaatgttctaacaacattctcaaattcaaatgttgaatt 36381266  T

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