View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20098_high_11 (Length: 253)
Name: NF20098_high_11
Description: NF20098
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20098_high_11 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 18 - 235
Target Start/End: Original strand, 48797679 - 48797896
Alignment:
| Q |
18 |
gatatgtagtgtagactaccgatattatattggcttttagaatttcattttgtagtatgagggtaattagcattacttttggatactagacttgatttta |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48797679 |
gatatgtagtgtagactaccgatattatattggcttttagaatttcaatttgtagtatgagggtaattagcattacttttggatactagacttgatttta |
48797778 |
T |
|
| Q |
118 |
gctacaattaatacaagccctccacttaatatcttatataaaaaataaatgatctataattttatctcattctattgcaaaatctgcatattcatataga |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48797779 |
gctacaattaatacaagccctccacttaatatcttatataaaaaataaatgatctataattttatctcattctattgcaaaatctgcatattcatataga |
48797878 |
T |
|
| Q |
218 |
cgaaaagattagtatttg |
235 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
48797879 |
cgaaaagattagtatttg |
48797896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University