View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20098_high_15 (Length: 203)
Name: NF20098_high_15
Description: NF20098
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20098_high_15 |
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Alignment Details
Target: chr3 (Bit Score: 165; Significance: 2e-88; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 12 - 187
Target Start/End: Original strand, 477117 - 477295
Alignment:
| Q |
12 |
agcaaaggttgagttcagcaagtcattattataaggtgaaaggtgcatccaacaactttttaaaatagttttttgggtta---atttcatttttgcatcc |
108 |
Q |
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| T |
477117 |
agcaaaggttgagttcagcaagtcattattataaggtgaaaggtgcatccaacaactttttaaaatagttttttgggttagtaatttcatttttgcatcc |
477216 |
T |
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| Q |
109 |
ttctatgtttctatttcccgcaatgtctttagttataataacttttaatggataaattacaaaacccttatttgagaat |
187 |
Q |
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| T |
477217 |
ttctatgtttctatttcccgcaatgtctttagttataataacttttaatggataaattacaaaacccttatttgagaat |
477295 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 38 - 124
Target Start/End: Complemental strand, 777166 - 777076
Alignment:
| Q |
38 |
tattataaggtgaaaggtgcatccaacaactttttaaaatagttttttgggt----taatttcatttttgcatccttctatgtttctattt |
124 |
Q |
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| T |
777166 |
tattataaggtgaaaggtgcattcaacaacttttaaagatagattgtttggtttagtaatgttatttttgcatccttctctgtttctattt |
777076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 75
Target Start/End: Complemental strand, 5360170 - 5360119
Alignment:
| Q |
21 |
tgagttcagcaagtcattattataaggtgaaaggtgcatccaacaactttttaaa |
75 |
Q |
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| T |
5360170 |
tgagttcatcaagtca---ttataaggtgaaaggtgcatccaacaaatttttaaa |
5360119 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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