View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20098_high_2 (Length: 620)
Name: NF20098_high_2
Description: NF20098
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20098_high_2 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 556; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 556; E-Value: 0
Query Start/End: Original strand, 1 - 608
Target Start/End: Complemental strand, 36595694 - 36595087
Alignment:
| Q |
1 |
aaaaacctaacaaaattcaatggcggagattctgaaatagaccaagaggctgcatttcccaatgcccgccatgaatttggcgaacatggcggggttaaca |
100 |
Q |
| |
|
||||| ||||||||||||||||||||||| ||||| |||||| |||||| ||| | |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36595694 |
aaaaaactaacaaaattcaatggcggagagtctgacgtagacccagaggccgcactcgccaatgcccgccatgaatttggcgaacatggcggggttaaca |
36595595 |
T |
|
| Q |
101 |
tgtcgattgaggcctctgccacgttcaccgtcatggaaccagatactctccgcaaaatatttgctggagagcttggtcatgaaggcgattactacgtcta |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36595594 |
tgtcgattgaggcctctgccacgttcaccgtcatggaaccagatactctccgcaaaatatttgctggagagcttggtcatgaaggcgattactacgtcta |
36595495 |
T |
|
| Q |
201 |
cagccgtcatttcaacccaactgtcctcaatctcagccgtaagatggcggccctcgaaggcactgaggccgcctattgtacagccagtggcatgtccgcc |
300 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36595494 |
cagccgtcatttcaacccaaccgtcctcaatctcagccgtaagatggcggccctcgaaggcactgaggccgcctattgtacagccagtggcatgtccgcc |
36595395 |
T |
|
| Q |
301 |
atttctgcagttttgttacagctctgcagccacggcggacatgttgtggcttctagtactctttatggtgggacccatgcacttttgcagcatttctttg |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36595394 |
atttctgcagttttgttacagctctgcagccacggcggacatgttgtggcttctagtactctttatggtgggacccatgcacttttgcagcatttctttg |
36595295 |
T |
|
| Q |
401 |
tgaggacatgcaacataaccacaacttttgttgacatatccgatttggaagcagttgagaatgcaattgtggaagggaagaccaaagtgctgtattttga |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36595294 |
tgaggacatgcaacataaccacaacttttgttgacatatccgatttggaagcagttgagaatgcaattgtggaagggaagaccaaagtgctgtattttga |
36595195 |
T |
|
| Q |
501 |
gtcaattgcaaatccaagcttgaatgtggccaatactcctgagctagctaggattgcacacaaaaagggagtgactgtggtggttgataacacctttgct |
600 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
36595194 |
gtcaattgcaaatccaagcttgaatgtggccaatactcctgagcttgctaggattgcacacaaaaagggagtaactgtggtggttgataacacctttgct |
36595095 |
T |
|
| Q |
601 |
cctttgct |
608 |
Q |
| |
|
||| |||| |
|
|
| T |
36595094 |
cctatgct |
36595087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 73 - 305
Target Start/End: Original strand, 34809627 - 34809859
Alignment:
| Q |
73 |
gaatttggcgaacatggcggggttaacatgtcgattgaggcctctgccacgttcaccgtcatggaaccagatactctccgcaaaatatttgctggagagc |
172 |
Q |
| |
|
||||| |||||||| ||||| || |||||||| || || ||||| | || ||||| |||||||||||||| |||||||| || || || |||||| |
|
|
| T |
34809627 |
gaattcggcgaacacggcggcgtaaacatgtcaatagaagcctcggtaacattcacagtcatggaaccagaaactctccgacgcatgttcgccggagagt |
34809726 |
T |
|
| Q |
173 |
ttggtcatgaaggcgattactacgtctacagccgtcatttcaacccaactgtcctcaatctcagccgtaagatggcggccctcgaaggcactgaggccgc |
272 |
Q |
| |
|
| |||| || |||| | || ||||||||||||||| |||||||| || ||||| || ||| |||| ||||| || |||||||| || || ||||| |
|
|
| T |
34809727 |
taggtccagaccgcgacttcttcgtctacagccgtcacttcaaccctaccgtccttaacctctcccgtctaatggccgctctcgaaggtacagaagccgc |
34809826 |
T |
|
| Q |
273 |
ctattgtacagccagtggcatgtccgccatttc |
305 |
Q |
| |
|
|| |||||| |||| ||||||||||||||||| |
|
|
| T |
34809827 |
ttactgtacatccagcggcatgtccgccatttc |
34809859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University