View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20098_high_3 (Length: 530)
Name: NF20098_high_3
Description: NF20098
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20098_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 459; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 459; E-Value: 0
Query Start/End: Original strand, 16 - 512
Target Start/End: Complemental strand, 42597753 - 42597257
Alignment:
| Q |
16 |
atgaagccctaattgcacatttgagaaaactaactcttattacctttctgaatttagaaaattctcttagacaacaacttttgaaaaacttgaccttcat |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42597753 |
atgaagccctaattgcacatttgagaaaactaactcttattacctttctgaatttagaaaattctcttagacaacaacttttgaaaaacttgaccttcat |
42597654 |
T |
|
| Q |
116 |
ttcatcacatttataga----agtggagaggtataattgaagggtaggagcaaaggttgatgttctatatatataaaggttaaaatagtgaagggtagct |
211 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42597653 |
ttcatcacatttatagatggaagtggagaggtataattgaagggtaggagcaaaggttgatgttctatatatataaaggttaaaatagtgaagggtagct |
42597554 |
T |
|
| Q |
212 |
aatgtacaatgtcaataacatttaaaaatttaggcaaaaggaatcataataggtatggtttgttttgtagcttgagtatatttatttaatttagtacaaa |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
42597553 |
aatgtacaatgtcaataacatttaaaaatttaggcaaaaggaatcataataggtatggtttgttttgtagcttgagtatattta----atttagtacaaa |
42597458 |
T |
|
| Q |
312 |
taatagagttttgcacgcattacatttactttgtacgaaataggaccttgtcttgttatgtataaagggaagtacccccgcacgttgggactgataggaa |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42597457 |
taatagagttttgcacgcattacatttactttgtacgaaataggaccttgtcttgttatgtataaagggaagtacccccgcacgttgggactgataggaa |
42597358 |
T |
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| Q |
412 |
aaaggcacacaggagggataaaagtgttctggttggatcaataattaacattgaaagtacaaattgtgtttcatagtagagaatagagatatggtgaaag |
511 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
42597357 |
aaaggcacacaggagggataaaagggttctggttggatcaataattaacattgaaagtacaaattgtgtttcatagtagagtatagagatatggtgaaag |
42597258 |
T |
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