View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20098_low_10 (Length: 259)
Name: NF20098_low_10
Description: NF20098
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20098_low_10 |
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| [»] chr4 (2 HSPs) |
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| [»] scaffold0049 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 71; Significance: 3e-32; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 148 - 259
Target Start/End: Original strand, 20674125 - 20674244
Alignment:
| Q |
148 |
agtagtagatccaatcttttcttctcttctttcttggcagttccaatccatccaatttctggatcaatcatcaac--------gcagatcaataacacaa |
239 |
Q |
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| T |
20674125 |
agtagcagatccaatcttttattctcttctttcttggcagctccaatccatccaatttatggatcaatcatcaacacaacaattcagatcaataacacaa |
20674224 |
T |
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| Q |
240 |
caacaacacatcattaaaaa |
259 |
Q |
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|||||||||||||||||||| |
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| T |
20674225 |
caacaacacatcattaaaaa |
20674244 |
T |
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Target: chr4; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 20673992 - 20674076
Alignment:
| Q |
1 |
cttcatctctttctcttcacatgttcatcatctttccaaacataaactcaaa-cctaacaaccaaactaaattcccccaacaaat |
84 |
Q |
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| T |
20673992 |
cttcatctctttctcttctcatgttcatcatctttccaaacataaactcaaaccctaacaaccaaactttattaccccaacaaat |
20674076 |
T |
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Target: chr7 (Bit Score: 69; Significance: 5e-31; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 46833348 - 46833432
Alignment:
| Q |
1 |
cttcatctctttctcttcacatgttcatcatctttccaaacataaactcaaa-cctaacaaccaaactaaattcccccaacaaat |
84 |
Q |
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| T |
46833348 |
cttcatctctttctcttctcatgttcatcatctttccaaacataaactcaaaccctaacaaccaaactatattcccccaacaaat |
46833432 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 148 - 195
Target Start/End: Original strand, 46833496 - 46833543
Alignment:
| Q |
148 |
agtagtagatccaatcttttcttctcttctttcttggcagttccaatc |
195 |
Q |
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| T |
46833496 |
agtagcagatccaatcttttcttctcttctttcttggcagttccaatc |
46833543 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 217 - 259
Target Start/End: Original strand, 46833541 - 46833586
Alignment:
| Q |
217 |
atcaacgcagatcaataac---acaacaacaacacatcattaaaaa |
259 |
Q |
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| T |
46833541 |
atcaacgcagatcaataacacaacaacaacaacacatcattaaaaa |
46833586 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0049 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: scaffold0049
Description:
Target: scaffold0049; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 3669 - 3590
Alignment:
| Q |
1 |
cttcatctctttctcttcacatgttcatcatctttccaaacataaactcaaa-cctaacaaccaaactaaattcccccaa |
79 |
Q |
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| T |
3669 |
cttcatctctttctcctctcatgttcatcatctttccaaacataaactcaaatcctaacaaccaaactttattcccccaa |
3590 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 148 - 222
Target Start/End: Original strand, 42277667 - 42277740
Alignment:
| Q |
148 |
agtagtagatccaatcttttcttctcttctttcttggcagttccaatccatccaatttctggatcaatcatcaac |
222 |
Q |
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| T |
42277667 |
agtagcagacccaatcttttgttctcttctttcttggcagttccaatccatccaatttccggat-aatcatcaac |
42277740 |
T |
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