View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20098_low_11 (Length: 253)
Name: NF20098_low_11
Description: NF20098
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20098_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 154; Significance: 9e-82; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 19 - 251
Target Start/End: Complemental strand, 36595851 - 36595621
Alignment:
| Q |
19 |
attgtacacaataacctctccttctctctccaccttatttttct--ccaactcttgttcgttttttccttttgagaattcatggcggatacgctggttaa |
116 |
Q |
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| T |
36595851 |
attgtacacattaacctctctttctctctccaccttattttctttgctaactcttgttcgttttttc-ttttgaga---catggcggatacgttgtttaa |
36595756 |
T |
|
| Q |
117 |
tgttaatgttctcaacaacaaacgcagcctcgaaaaccctgttgttgagggaaaagacaccaaaaaactaacaaaattcaatggcggagagtctgacgta |
216 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36595755 |
tgttaatgttctcaacaacaaacgcagcctcgaaaatcctgttgttgaggttaaagacaccaaaaaactaacaaaattcaatggcggagagtctgacgta |
36595656 |
T |
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| Q |
217 |
gacccagaggctgcacttgccaatgcccgccatga |
251 |
Q |
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||||||||||| ||||| ||||||||||||||||| |
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| T |
36595655 |
gacccagaggccgcactcgccaatgcccgccatga |
36595621 |
T |
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