View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20098_low_15 (Length: 217)
Name: NF20098_low_15
Description: NF20098
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20098_low_15 |
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| [»] scaffold0606 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 208; Significance: 1e-114; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 12618682 - 12618475
Alignment:
| Q |
1 |
catacttctaaccatttatagagatagctatatgattccaaatgatcatgatcacaacatcatagaaagcaaccatttcttgttgtccaaaccatgcgac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12618682 |
catacttctaaccatttatagagatagctatatgattccaaatgatcatgatcacaacatcatagaaagcaaccatttcttgttgtccaaaccatgcgac |
12618583 |
T |
|
| Q |
101 |
gaaatctatgtagttggtgaaggtgagacacttaacacaattagtgataagtgtaatgatccttttattgttgagaacaatcctcatatacatgaccctg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12618582 |
gaaatctatgtagttggtgaaggtgagacacttaacacaattagtgataagtgtaatgatccttttattgttgagaacaatcctcatatacatgaccctg |
12618483 |
T |
|
| Q |
201 |
atgatgtc |
208 |
Q |
| |
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|||||||| |
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| T |
12618482 |
atgatgtc |
12618475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 2 - 208
Target Start/End: Complemental strand, 12631497 - 12631291
Alignment:
| Q |
2 |
atacttctaaccatttatagagatagctatatgattccaaatgatcatgatcacaacatcatagaaagcaaccatttcttgttgtccaaaccatgcgacg |
101 |
Q |
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|||||||||||||| | |||||| || |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12631497 |
atacttctaaccatatttagagacagttatatgattccaaatgatcatgattacaacatcatagaaagcaaccatttcttgttgtccaaaccatgcgacg |
12631398 |
T |
|
| Q |
102 |
aaatctatgtagttggtgaaggtgagacacttaacacaattagtgataagtgtaatgatccttttattgttgagaacaatcctcatatacatgaccctga |
201 |
Q |
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| T |
12631397 |
aaatctatgtggttggtgaaggtgagacacttaacacaattagtgataagtgtaatgatccttttattgttgagaataatcctcatattcatgaccctga |
12631298 |
T |
|
| Q |
202 |
tgatgtc |
208 |
Q |
| |
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||||||| |
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| T |
12631297 |
tgatgtc |
12631291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 5 - 208
Target Start/End: Complemental strand, 16783588 - 16783385
Alignment:
| Q |
5 |
cttctaaccatttatagagatagctatatgattccaaatgatcatgatcacaacatcatagaaagcaaccatttcttgttgtccaaaccatgcgacgaaa |
104 |
Q |
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||||||| ||| | ||||||||||| ||||||||||||| || ||||||||||||| ||||| |||||||||||||||| ||||||||||||||||||| |
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| T |
16783588 |
cttctaagcatatttagagatagctctatgattccaaataataatgatcacaacatgatagagagcaaccatttcttgtcttccaaaccatgcgacgaaa |
16783489 |
T |
|
| Q |
105 |
tctatgtagttggtgaaggtgagacacttaacacaattagtgataagtgtaatgatccttttattgttgagaacaatcctcatatacatgaccctgatga |
204 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||| |||||||| |
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| T |
16783488 |
tctatgtagttggtgaaggtgagacactaaacacaattagtgataagtgtaatgaccctttcattgttgagaataatcctcatatacatgatcctgatga |
16783389 |
T |
|
| Q |
205 |
tgtc |
208 |
Q |
| |
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|||| |
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| T |
16783388 |
tgtc |
16783385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 99 - 208
Target Start/End: Complemental strand, 19024970 - 19024861
Alignment:
| Q |
99 |
acgaaatctatgtagttggtgaaggtgagacacttaacacaattagtgataagtgtaatgatccttttattgttgagaacaatcctcatatacatgaccc |
198 |
Q |
| |
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|||||||||| || || |||||||||||| |||| ||||| |||||||||||| | | |||||||||||| |||| |||||||||||||| ||||| |
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| T |
19024970 |
acgaaatctacgtggtatgtgaaggtgagatgcttagcacaaatagtgataagtgcgacggcccttttattgttaagaataatcctcatatacacgaccc |
19024871 |
T |
|
| Q |
199 |
tgatgatgtc |
208 |
Q |
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|||||||||| |
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| T |
19024870 |
tgatgatgtc |
19024861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 99 - 208
Target Start/End: Original strand, 20729666 - 20729775
Alignment:
| Q |
99 |
acgaaatctatgtagttggtgaaggtgagacacttaacacaattagtgataagtgtaatgatccttttattgttgagaacaatcctcatatacatgaccc |
198 |
Q |
| |
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|||||||||| || || |||||||||||| |||| ||||| |||||||||||| | | |||||||||||| |||| |||||||||||||| ||||| |
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| T |
20729666 |
acgaaatctacgtggtatgtgaaggtgagatgcttagcacaaatagtgataagtgcgacggcccttttattgttaagaataatcctcatatacacgaccc |
20729765 |
T |
|
| Q |
199 |
tgatgatgtc |
208 |
Q |
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|||||||||| |
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| T |
20729766 |
tgatgatgtc |
20729775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 125 - 207
Target Start/End: Original strand, 26303227 - 26303309
Alignment:
| Q |
125 |
gagacacttaacacaattagtgataagtgtaatgatccttttattgttgagaacaatcctcatatacatgaccctgatgatgt |
207 |
Q |
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| T |
26303227 |
gagacacttcaaacaataagtgaaaagtgtggtgatccttatattgttgaagagaatccacatattcatgatcctgatgatgt |
26303309 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0606 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0606
Description:
Target: scaffold0606; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 25 - 62
Target Start/End: Original strand, 7027 - 7064
Alignment:
| Q |
25 |
tagctatatgattccaaatgatcatgatcacaacatca |
62 |
Q |
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||||| ||||||||||||| |||||||||||||||||| |
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| T |
7027 |
tagctctatgattccaaataatcatgatcacaacatca |
7064 |
T |
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