View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20098_low_4 (Length: 491)
Name: NF20098_low_4
Description: NF20098
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20098_low_4 |
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| [»] scaffold0329 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 399; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 14 - 475
Target Start/End: Original strand, 15486697 - 15487159
Alignment:
| Q |
14 |
aggcagagagaatgattgatatgaatcaatcatatgtgaattgattcaaccatgttttctaaaagttttgcgacacaaaaagaaacaaaaagccagaatt |
113 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| ||||||||||||||| |||| |
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| T |
15486697 |
aggcagagagaatgattgatacgaatcaatcatatgtgaattgattcaaccatgttttctaaaagatttgccacacaaagagaaacaaaaagccacaatt |
15486796 |
T |
|
| Q |
114 |
gacatctaaaaaccttatgacacaatgaggcaatgattgctaggtgtgttaacagtttttaggctataactaacatttgataagaattaacacaacctag |
213 |
Q |
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||||||||| |||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15486797 |
gacatctaagaaccttatgacacaatgaggcaataattgctaggtgcgttaacagtttttaggctataactaacatttgataagaattaacacaacctag |
15486896 |
T |
|
| Q |
214 |
ctaataaaaatcatccaggaaactataaaactaacaaacatcattaatgcaaaaggtcatatactaagcgaaactttattgttgtattatcaacaagttc |
313 |
Q |
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|||||||| |||||| |||||||||| ||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
15486897 |
ctaataaacatcatcaaggaaactatcaaactaacaaacatcattaatacaaaaggtcatatactaagggaaactttattgttgtattatcaacaagttc |
15486996 |
T |
|
| Q |
314 |
catagtatgttatgaaaacacatgaaaattttcctaatgatagattgccaagtcagaaattaaatgcttccatgctt-cccctcaattcttcattatcct |
412 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
15486997 |
catagtatgttatgaaaacacatgaaaattttcctaatgatagattgccaagtcagaaattaaatgcttccatgcttccccctcaattcttcattatcct |
15487096 |
T |
|
| Q |
413 |
tattgaacgcatcaattccatttctttaggatgaaagcttcaactgcctggatcattgattat |
475 |
Q |
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| T |
15487097 |
tattgaacgcatcaattccatttctttaggatgaaagcttcaactgcctgcatcattgattat |
15487159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 14 - 190
Target Start/End: Original strand, 21516710 - 21516885
Alignment:
| Q |
14 |
aggcagagagaatgattgatatgaatcaatcatatgtgaattgattcaaccatgttttctaaaagttttgcgacacaaaaagaaacaaaaagccagaatt |
113 |
Q |
| |
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||||||| ||||||||||| | |||||| || ||||||||||| |||| ||| || |||||||| || || |||| || ||||||| | || | || |
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| T |
21516710 |
aggcagaaagaatgattga-acaaatcaagcaaatgtgaattgaatcaagcatcttgaaaaaaagtttcgccacccaaagaggaacaaaaggtcacactt |
21516808 |
T |
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| Q |
114 |
gacatctaaaaaccttatgacacaatgaggcaatgattgctaggtgtgttaacagtttttaggctataactaacatt |
190 |
Q |
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||||||||| |||| ||||||||||||||||||||||||||||||| |||||| ||| |||||||||| ||||||| |
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| T |
21516809 |
gacatctaagaaccatatgacacaatgaggcaatgattgctaggtgctttaacattttctaggctataaataacatt |
21516885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 304 - 451
Target Start/End: Original strand, 29707913 - 29708062
Alignment:
| Q |
304 |
caacaagttccatagtatgttatgaaaacacatgaaaattttcctaatgatagattgccaagtcagaaattaaatgcttccatgctt-cccctcaattct |
402 |
Q |
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|||||||||||| | |||| | | |||| ||||||| ||||||| ||| |||||||||| |||||||| ||||||||| |||||| ||||||||| || |
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| T |
29707913 |
caacaagttccagaatatgatctaaaaatacatgaattttttccttatggtagattgccatgtcagaaacaaaatgcttcaatgcttccccctcaatcct |
29708012 |
T |
|
| Q |
403 |
tcattatccttattgaacgcatc-aattccatttctttaggatgaaagct |
451 |
Q |
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||||||||||| |||||| |||| ||||||||||||| ||| ||| |||| |
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| T |
29708013 |
tcattatccttcttgaacacatcaaattccatttcttcaggctgagagct |
29708062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 96; Significance: 7e-47; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 18 - 227
Target Start/End: Original strand, 26677080 - 26677288
Alignment:
| Q |
18 |
agagagaatgattgatatgaatcaatcatatgtgaattgattcaaccatgttttctaaaagttttgcgacacaaaaagaaacaaaaagccagaattgaca |
117 |
Q |
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||||| ||||||||||| ||||||||||||||||| ||||||| |||||| | ||||| ||||| ||||||| || || ||||||| |||||||| |
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| T |
26677080 |
agagataatgattgatacagatcaatcatatgtgaatcgattcaaacatgtt--caaaaaggtttgccacacaaagaggaataaaaagctctaattgaca |
26677177 |
T |
|
| Q |
118 |
tctaaaaaccttatgacacaatgaggcaatgattgctaggtgtgttaacagtttttaggctataactaacatttgataagaattaac-acaacctagcta |
216 |
Q |
| |
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||||| |||||||||| ||||||||||||||||||||||||| |||| | |||| ||||||||||||||||||||||||||||||| | |||||||||| |
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| T |
26677178 |
tctaagaaccttatgatacaatgaggcaatgattgctaggtgctttaaaaattttcaggctataactaacatttgataagaattaacaaaaacctagcta |
26677277 |
T |
|
| Q |
217 |
ataaaaatcat |
227 |
Q |
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||||| ||||| |
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| T |
26677278 |
ataaacatcat |
26677288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 81 - 181
Target Start/End: Complemental strand, 17815594 - 17815492
Alignment:
| Q |
81 |
ttgcgacacaaaaagaaacaaaaagc-cagaattgacatct-aaaaaccttatgacacaatgaggcaatgattgctaggtgtgttaacagtttttaggct |
178 |
Q |
| |
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|||| |||||||||||||||||||| || | | ||||||| ||||||| |||||||||||||||||| ||||| |||||| |||| | ||| |||||| |
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| T |
17815594 |
ttgccacacaaaaagaaacaaaaaggtcacactagacatcttaaaaaccatatgacacaatgaggcaaagattgttaggtgctttaatattttctaggct |
17815495 |
T |
|
| Q |
179 |
ata |
181 |
Q |
| |
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||| |
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| T |
17815494 |
ata |
17815492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 22 - 190
Target Start/End: Original strand, 24176438 - 24176607
Alignment:
| Q |
22 |
agaatgattgatatgaatcaatcatatgtgaattgattcaaccatgttttctaaaag-ttttgcgacacaaaaagaaacaaaaagccagaattgacatct |
120 |
Q |
| |
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||||||||||||| ||||||| | ||| ||||| ||||||| || |||| ||||| |||||| ||||||| || ||||||| || | ||||||||| |
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| T |
24176438 |
agaatgattgatacgaatcaagcttatttgaatcgattcaagtatttttttcaaaaggttttgccacacaaagaggaacaaaagatcacacttgacatct |
24176537 |
T |
|
| Q |
121 |
aaaaaccttatgacacaatgaggcaatgattgctaggtgtgttaacagtttttaggctataactaacatt |
190 |
Q |
| |
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|| ||| ||||| | |||||||||||||||| || ||| |||| |||| || || |||||||||||| |
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| T |
24176538 |
aagaactatatgatagaatgaggcaatgattgttacgtgctttaagtgtttctatgccataactaacatt |
24176607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 209 - 281
Target Start/End: Original strand, 24176609 - 24176681
Alignment:
| Q |
209 |
cctagctaataaaaatcatccaggaaactataaaactaacaaacatcattaatgcaaaaggtcatatactaag |
281 |
Q |
| |
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||||||||||||| |||||| | ||||||| || |||||||||||||| || |||||||| |||||||||| |
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|
| T |
24176609 |
cctagctaataaatatcatcaatgaaactagcaacctaacaaacatcatcaaaacaaaaggttatatactaag |
24176681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 133 - 188
Target Start/End: Complemental strand, 14089560 - 14089504
Alignment:
| Q |
133 |
acacaatgaggcaatgattgctaggtgtgttaaca-gtttttaggctataactaaca |
188 |
Q |
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||||||||||||||||||||||||||| |||||| |||| || ||||||||||||| |
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| T |
14089560 |
acacaatgaggcaatgattgctaggtgctttaacatgtttctaagctataactaaca |
14089504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 304 - 427
Target Start/End: Original strand, 35628832 - 35628957
Alignment:
| Q |
304 |
caacaagttccata--gtatgttatgaaaacacatgaaaattttcctaatgatagattgccaagtcagaaattaaatgcttccatgcttcccctcaattc |
401 |
Q |
| |
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|||||||||||||| ||||||| || ||||||| |||| ||||||| | |||||| ||||| ||||| ||||||||| ||| ||| | |||||| |
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| T |
35628832 |
caacaagttccataatgtatgttctggaaacacaggaaagttttccttacagtagattttcaagttagaaactaaatgctttaatgtttctctacaattc |
35628931 |
T |
|
| Q |
402 |
ttcattatccttattgaacgcatcaa |
427 |
Q |
| |
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| |||||||||| | ||||||||||| |
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| T |
35628932 |
tacattatccttctcgaacgcatcaa |
35628957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0329 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0329
Description:
Target: scaffold0329; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 22 - 62
Target Start/End: Complemental strand, 2225 - 2185
Alignment:
| Q |
22 |
agaatgattgatatgaatcaatcatatgtgaattgattcaa |
62 |
Q |
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||||||||||||| ||||||| ||||||||||| ||||||| |
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| T |
2225 |
agaatgattgatacgaatcaagcatatgtgaatcgattcaa |
2185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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