View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20098_low_5 (Length: 472)
Name: NF20098_low_5
Description: NF20098
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20098_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 85; Significance: 3e-40; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 227 - 318
Target Start/End: Complemental strand, 44730606 - 44730514
Alignment:
| Q |
227 |
tcttgggagaagattctctttagtttttctgc-tctcactttttctcatgtaatcactatccttaaaacccatttatccttttattttttaat |
318 |
Q |
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| T |
44730606 |
tcttgggagaagattctctttagtttttctgcctctcactttttctcatgtaatcactatccttaaaacccatttatccttttattttttaat |
44730514 |
T |
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Target: chr2; HSP #2
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 385 - 463
Target Start/End: Complemental strand, 44730513 - 44730435
Alignment:
| Q |
385 |
actccaaacccatttttcttattttatttgaaatgtaaccttgaaaaaagtatttaaactattttcaatatagaataat |
463 |
Q |
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| T |
44730513 |
actccaaacccaattttcttattttatttgaaatgtaaccttgaaaaaagcatttaaactattttcaatatagaataat |
44730435 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 97 - 157
Target Start/End: Complemental strand, 44730663 - 44730603
Alignment:
| Q |
97 |
aacaacaatgatatttggatacttttaattttctaaccctcgttaaacatatcattttctt |
157 |
Q |
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| T |
44730663 |
aacaacaatgatatttggatacctttaattttctaaccctcgttaaacatatcattttctt |
44730603 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 62 - 101
Target Start/End: Complemental strand, 44730810 - 44730771
Alignment:
| Q |
62 |
gatgttggctccttcattgtatatggcaagatggaaacaa |
101 |
Q |
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| T |
44730810 |
gatgttgggtccttgattgtatatggcaagatggaaacaa |
44730771 |
T |
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