View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20098_low_7 (Length: 356)

Name: NF20098_low_7
Description: NF20098
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20098_low_7
NF20098_low_7
[»] chr2 (8 HSPs)
chr2 (43-345)||(44423938-44424230)
chr2 (31-78)||(34235185-34235232)
chr2 (28-79)||(40711052-40711103)
chr2 (33-79)||(27001705-27001751)
chr2 (28-78)||(37528988-37529038)
chr2 (28-79)||(45464131-45464182)
chr2 (30-75)||(25604493-25604538)
chr2 (28-68)||(6213777-6213817)
[»] chr7 (4 HSPs)
chr7 (28-78)||(37264452-37264502)
chr7 (29-77)||(6591463-6591511)
chr7 (28-83)||(32776124-32776179)
chr7 (33-80)||(39143588-39143635)
[»] chr5 (7 HSPs)
chr5 (28-78)||(15898618-15898668)
chr5 (28-82)||(22983084-22983138)
chr5 (31-79)||(72037-72085)
chr5 (28-78)||(5147413-5147463)
chr5 (28-78)||(16926006-16926056)
chr5 (28-78)||(25111067-25111117)
chr5 (28-78)||(25170158-25170208)
[»] chr3 (7 HSPs)
chr3 (28-78)||(30261420-30261470)
chr3 (28-79)||(39144801-39144852)
chr3 (28-78)||(8769363-8769413)
chr3 (28-78)||(46627847-46627897)
chr3 (28-79)||(44218950-44219001)
chr3 (32-79)||(7886222-7886270)
chr3 (35-79)||(53583476-53583520)
[»] chr1 (11 HSPs)
chr1 (28-78)||(29225322-29225372)
chr1 (28-81)||(4933924-4933977)
chr1 (28-77)||(5040494-5040543)
chr1 (51-84)||(10587493-10587526)
chr1 (28-72)||(30903183-30903227)
chr1 (28-59)||(7224541-7224572)
chr1 (28-79)||(25983550-25983600)
chr1 (28-78)||(4466072-4466122)
chr1 (28-78)||(34814057-34814107)
chr1 (29-78)||(35622671-35622720)
chr1 (28-79)||(24131317-24131369)
[»] chr8 (5 HSPs)
chr8 (30-79)||(43844672-43844721)
chr8 (28-79)||(15020907-15020958)
chr8 (29-79)||(7042895-7042945)
chr8 (28-73)||(8840468-8840512)
chr8 (34-78)||(36011909-36011954)
[»] chr6 (3 HSPs)
chr6 (31-79)||(29444183-29444231)
chr6 (33-79)||(34703747-34703793)
chr6 (28-79)||(16126352-16126403)
[»] chr4 (5 HSPs)
chr4 (28-79)||(41594763-41594814)
chr4 (28-79)||(46958860-46958911)
chr4 (28-78)||(5499349-5499399)
chr4 (28-78)||(22872303-22872353)
chr4 (28-78)||(47277596-47277648)


Alignment Details
Target: chr2 (Bit Score: 229; Significance: 1e-126; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 43 - 345
Target Start/End: Complemental strand, 44424230 - 44423938
Alignment:
Q  43 aacaaaagactcacttaaaatgggacggagggagtatcaaaatagtctacccgagatttttgtaccaatttacccctattccctgaccacaaagataatg 142  Q
    ||||||||| || |||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||    
T  44424230 aacaaaagattcgcttaaaatgggacggagggagtattaaaatagtctacccgagatttctgtaccaatttacccctattccatgaccacaaagataatg 44424131  T
Q  143 tgaaggttgatg-ctaagtactacacatgaaattcaaattttagcatgctatgagttgaagttatctaactaaccattaaaatgaaataataactactta 241  Q
    |||||||||||| |||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44424130 tgaaggttgatgcctaagtactacacatg-aattcaaatcttagcatgctatgagttgaagttatctaactaaccattaaaatgaaataataactactta 44424032  T
Q  242 tttcatcaatcatctgtgtcaaatttgaatgccaaaaaatttaaacaacaaaaagttcaacaatcaagttcttctagtttttacctataagatttgtagt 341  Q
    ||          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44424031 tt----------tctgtgtcaaatttgaatgccaaaaaatttaaacaacaaaaagttcaacaatcaagttcttctagtttttacctataagatttgtagt 44423942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 31 - 78
Target Start/End: Original strand, 34235185 - 34235232
Alignment:
Q  31 atgtgtgaaatgaacaaaagactcacttaaaatgggacggagggagta 78  Q
    ||||||||||| |||||||  |||||||||||||||||||||||||||    
T  34235185 atgtgtgaaattaacaaaatgctcacttaaaatgggacggagggagta 34235232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 28 - 79
Target Start/End: Original strand, 40711052 - 40711103
Alignment:
Q  28 aatatgtgtgaaatgaacaaaagactcacttaaaatgggacggagggagtat 79  Q
    |||||||||||||| |||||||||||||||||| ||| ||||||| ||||||    
T  40711052 aatatgtgtgaaattaacaaaagactcacttaagatgtgacggagagagtat 40711103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 33 - 79
Target Start/End: Original strand, 27001705 - 27001751
Alignment:
Q  33 gtgtgaaatgaacaaaagactcacttaaaatgggacggagggagtat 79  Q
    |||||||||||||||||  |||||||||| |||||||||||||||||    
T  27001705 gtgtgaaatgaacaaaatgctcacttaaattgggacggagggagtat 27001751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 28 - 78
Target Start/End: Complemental strand, 37529038 - 37528988
Alignment:
Q  28 aatatgtgtgaaatgaacaaaagactcacttaaaatgggacggagggagta 78  Q
    |||| |||||||||||||||| |||||| ||||| ||||||||||||||||    
T  37529038 aataagtgtgaaatgaacaaatgactcagttaaattgggacggagggagta 37528988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 28 - 79
Target Start/End: Complemental strand, 45464182 - 45464131
Alignment:
Q  28 aatatgtgtgaaatgaacaaaagactcacttaaaatgggacggagggagtat 79  Q
    |||||||||||||||| |||| |||||||||||  |||||||||| ||||||    
T  45464182 aatatgtgtgaaatgagcaaatgactcacttaatttgggacggagagagtat 45464131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 75
Target Start/End: Original strand, 25604493 - 25604538
Alignment:
Q  30 tatgtgtgaaatgaacaaaagactcacttaaaatgggacggaggga 75  Q
    |||||||||||| |||||||| |||| |||||||| ||||||||||    
T  25604493 tatgtgtgaaatcaacaaaaggctcagttaaaatgcgacggaggga 25604538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 28 - 68
Target Start/End: Complemental strand, 6213817 - 6213777
Alignment:
Q  28 aatatgtgtgaaatgaacaaaagactcacttaaaatgggac 68  Q
    |||| ||||||||||| ||||||||||||||||| ||||||    
T  6213817 aataagtgtgaaatgagcaaaagactcacttaaattgggac 6213777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 28 - 78
Target Start/End: Original strand, 37264452 - 37264502
Alignment:
Q  28 aatatgtgtgaaatgaacaaaagactcacttaaaatgggacggagggagta 78  Q
    |||||||||||||||| |||||| |||||||||||||||||||||||||||    
T  37264452 aatatgtgtgaaatgagcaaaaggctcacttaaaatgggacggagggagta 37264502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 29 - 77
Target Start/End: Complemental strand, 6591511 - 6591463
Alignment:
Q  29 atatgtgtgaaatgaacaaaagactcacttaaaatgggacggagggagt 77  Q
    ||||||||||||||||||| ||||||||||||||||||||| |||||||    
T  6591511 atatgtgtgaaatgaacaatagactcacttaaaatgggacgaagggagt 6591463  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 28 - 83
Target Start/End: Original strand, 32776124 - 32776179
Alignment:
Q  28 aatatgtgtgaaatgaacaaaagactcacttaaaatgggacggagggagtatcaaa 83  Q
    |||||||||||||||| |||||| |||| ||| ||||| |||||||||||||||||    
T  32776124 aatatgtgtgaaatgagcaaaaggctcatttataatggaacggagggagtatcaaa 32776179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 33 - 80
Target Start/End: Complemental strand, 39143635 - 39143588
Alignment:
Q  33 gtgtgaaatgaacaaaagactcacttaaaatgggacggagggagtatc 80  Q
    ||||||||||| ||||||||||||||| ||||||||||| ||| ||||    
T  39143635 gtgtgaaatgagcaaaagactcacttataatgggacggatggaatatc 39143588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 28 - 78
Target Start/End: Original strand, 15898618 - 15898668
Alignment:
Q  28 aatatgtgtgaaatgaacaaaagactcacttaaaatgggacggagggagta 78  Q
    |||| ||||||||||||| ||||||||| ||||||||||||||||||||||    
T  15898618 aataagtgtgaaatgaactaaagactcatttaaaatgggacggagggagta 15898668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 28 - 82
Target Start/End: Original strand, 22983084 - 22983138
Alignment:
Q  28 aatatgtgtgaaatgaacaaaagactcacttaaaatgggacggagggagtatcaa 82  Q
    ||||||||||||||||||||||   | | ||||||||||||||||||||||||||    
T  22983084 aatatgtgtgaaatgaacaaaatgtttagttaaaatgggacggagggagtatcaa 22983138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 79
Target Start/End: Complemental strand, 72085 - 72037
Alignment:
Q  31 atgtgtgaaatgaacaaaagactcacttaaaatgggacggagggagtat 79  Q
    |||||||||||||||| ||  |||| |||||||||||||||||||||||    
T  72085 atgtgtgaaatgaacataaacctcagttaaaatgggacggagggagtat 72037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 78
Target Start/End: Complemental strand, 5147463 - 5147413
Alignment:
Q  28 aatatgtgtgaaatgaacaaaagactcacttaaaatgggacggagggagta 78  Q
    |||| |||||||||||   ||||||||| ||||||||||||||||||||||    
T  5147463 aataagtgtgaaatgagtcaaagactcagttaaaatgggacggagggagta 5147413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 78
Target Start/End: Complemental strand, 16926056 - 16926006
Alignment:
Q  28 aatatgtgtgaaatgaacaaaagactcacttaaaatgggacggagggagta 78  Q
    |||||||||||||||| ||||||  ||| ||| ||||||||||||||||||    
T  16926056 aatatgtgtgaaatgagcaaaagggtcaattataatgggacggagggagta 16926006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 78
Target Start/End: Complemental strand, 25111117 - 25111067
Alignment:
Q  28 aatatgtgtgaaatgaacaaaagactcacttaaaatgggacggagggagta 78  Q
    |||||||||||||||| |||||  |||||||| |||||||| |||||||||    
T  25111117 aatatgtgtgaaatgagcaaaatgctcacttataatgggacagagggagta 25111067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 78
Target Start/End: Complemental strand, 25170208 - 25170158
Alignment:
Q  28 aatatgtgtgaaatgaacaaaagactcacttaaaatgggacggagggagta 78  Q
    |||||||||||||||| |||||  |||||||| |||||||| |||||||||    
T  25170208 aatatgtgtgaaatgagcaaaatgctcacttataatgggacagagggagta 25170158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 28 - 78
Target Start/End: Complemental strand, 30261470 - 30261420
Alignment:
Q  28 aatatgtgtgaaatgaacaaaagactcacttaaaatgggacggagggagta 78  Q
    |||||| |||||||||||||||| |||| ||||||||||||||||||||||    
T  30261470 aatatgcgtgaaatgaacaaaaggctcagttaaaatgggacggagggagta 30261420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 28 - 79
Target Start/End: Original strand, 39144801 - 39144852
Alignment:
Q  28 aatatgtgtgaaatgaacaaaagactcacttaaaatgggacggagggagtat 79  Q
    ||||||||||||||||||||||| |||||||| ||||||| |||| ||||||    
T  39144801 aatatgtgtgaaatgaacaaaaggctcacttataatgggatggagagagtat 39144852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 28 - 78
Target Start/End: Original strand, 8769363 - 8769413
Alignment:
Q  28 aatatgtgtgaaatgaacaaaagactcacttaaaatgggacggagggagta 78  Q
    ||||||| |||||||||||||| ||||| ||||||||||||||| ||||||    
T  8769363 aatatgtatgaaatgaacaaaaaactcagttaaaatgggacggaaggagta 8769413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 28 - 78
Target Start/End: Complemental strand, 46627897 - 46627847
Alignment:
Q  28 aatatgtgtgaaatgaacaaaagactcacttaaaatgggacggagggagta 78  Q
    |||| |||||||||||||||||| |||||||||| |||||||||| |||||    
T  46627897 aataagtgtgaaatgaacaaaaggctcacttaaattgggacggagagagta 46627847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 28 - 79
Target Start/End: Complemental strand, 44219001 - 44218950
Alignment:
Q  28 aatatgtgtgaaatgaacaaaagactcacttaaaatgggacggagggagtat 79  Q
    ||||||||||||||||||||||||||   |||  ||||||||||||||||||    
T  44219001 aatatgtgtgaaatgaacaaaagactgggttattatgggacggagggagtat 44218950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 32 - 79
Target Start/End: Original strand, 7886222 - 7886270
Alignment:
Q  32 tgtgtgaaatgaacaaaaga-ctcacttaaaatgggacggagggagtat 79  Q
    ||||| |||||||||||| | |||||||| |||||||||||||||||||    
T  7886222 tgtgtaaaatgaacaaaaaaactcacttataatgggacggagggagtat 7886270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 35 - 79
Target Start/End: Complemental strand, 53583520 - 53583476
Alignment:
Q  35 gtgaaatgaacaaaagactcacttaaaatgggacggagggagtat 79  Q
    |||||||| |||||||||||||||| ||| | |||||||||||||    
T  53583520 gtgaaatggacaaaagactcacttataatagaacggagggagtat 53583476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 28 - 78
Target Start/End: Complemental strand, 29225372 - 29225322
Alignment:
Q  28 aatatgtgtgaaatgaacaaaagactcacttaaaatgggacggagggagta 78  Q
    |||||||||||||||| ||||||||||| ||| ||||||||||||||||||    
T  29225372 aatatgtgtgaaatgagcaaaagactcaattataatgggacggagggagta 29225322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 28 - 81
Target Start/End: Complemental strand, 4933977 - 4933924
Alignment:
Q  28 aatatgtgtgaaatgaacaaaagactcacttaaaatgggacggagggagtatca 81  Q
    ||||||||||||||||||||||| ||||| ||  ||||||||||||||||||||    
T  4933977 aatatgtgtgaaatgaacaaaaggctcacatattatgggacggagggagtatca 4933924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 28 - 77
Target Start/End: Complemental strand, 5040543 - 5040494
Alignment:
Q  28 aatatgtgtgaaatgaacaaaagactcacttaaaatgggacggagggagt 77  Q
    |||||||||||||||| |||| |||||||||||  |||||||||||||||    
T  5040543 aatatgtgtgaaatgagcaaaggactcacttaatctgggacggagggagt 5040494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 51 - 84
Target Start/End: Complemental strand, 10587526 - 10587493
Alignment:
Q  51 actcacttaaaatgggacggagggagtatcaaaa 84  Q
    ||||||||||||||||||||||||||||||||||    
T  10587526 actcacttaaaatgggacggagggagtatcaaaa 10587493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 28 - 72
Target Start/End: Complemental strand, 30903227 - 30903183
Alignment:
Q  28 aatatgtgtgaaatgaacaaaagactcacttaaaatgggacggag 72  Q
    ||||| |||||||||||||||||||||| ||| ||||||||||||    
T  30903227 aatatatgtgaaatgaacaaaagactcatttataatgggacggag 30903183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 28 - 59
Target Start/End: Original strand, 7224541 - 7224572
Alignment:
Q  28 aatatgtgtgaaatgaacaaaagactcactta 59  Q
    ||||||||||||||||||||||||||||||||    
T  7224541 aatatgtgtgaaatgaacaaaagactcactta 7224572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 28 - 79
Target Start/End: Complemental strand, 25983600 - 25983550
Alignment:
Q  28 aatatgtgtgaaatgaacaaaagactcacttaaaatgggacggagggagtat 79  Q
    |||||||||||| ||||||||||||||| |||||||| ||||||| ||||||    
T  25983600 aatatgtgtgaa-tgaacaaaagactcagttaaaatgagacggagagagtat 25983550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 78
Target Start/End: Complemental strand, 4466122 - 4466072
Alignment:
Q  28 aatatgtgtgaaatgaacaaaagactcacttaaaatgggacggagggagta 78  Q
    |||| |||||||||||||||| | |||| ||||| ||||||||||||||||    
T  4466122 aataagtgtgaaatgaacaaatggctcaattaaattgggacggagggagta 4466072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 78
Target Start/End: Original strand, 34814057 - 34814107
Alignment:
Q  28 aatatgtgtgaaatgaacaaaagactcacttaaaatgggacggagggagta 78  Q
    |||| ||||||||||| ||||| | ||||||||| ||||||||||||||||    
T  34814057 aataagtgtgaaatgagcaaaaaattcacttaaattgggacggagggagta 34814107  T

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Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 78
Target Start/End: Complemental strand, 35622720 - 35622671
Alignment:
Q  29 atatgtgtgaaatgaacaaaagactcacttaaaatgggacggagggagta 78  Q
    |||| ||| |||||||||||||||| | ||||||||| ||||||||||||    
T  35622720 atatatgtaaaatgaacaaaagacttagttaaaatggaacggagggagta 35622671  T

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Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 28 - 79
Target Start/End: Complemental strand, 24131369 - 24131317
Alignment:
Q  28 aatatgtgtgaaatgaa-caaaagactcacttaaaatgggacggagggagtat 79  Q
    |||| |||||||||||  |||| |||||| |||||||||||||||||||||||    
T  24131369 aataagtgtgaaatgagtcaaatgactcagttaaaatgggacggagggagtat 24131317  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 30 - 79
Target Start/End: Complemental strand, 43844721 - 43844672
Alignment:
Q  30 tatgtgtgaaatgaacaaaagactcacttaaaatgggacggagggagtat 79  Q
    |||||||||||||| ||||| ||||| |||||||||||||||||||||||    
T  43844721 tatgtgtgaaatgatcaaaaaactcaattaaaatgggacggagggagtat 43844672  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 28 - 79
Target Start/End: Original strand, 15020907 - 15020958
Alignment:
Q  28 aatatgtgtgaaatgaacaaaagactcacttaaaatgggacggagggagtat 79  Q
    ||||| |||||||||||||| |  ||||||||||||||||||||||||||||    
T  15020907 aatatatgtgaaatgaacaatatgctcacttaaaatgggacggagggagtat 15020958  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 29 - 79
Target Start/End: Original strand, 7042895 - 7042945
Alignment:
Q  29 atatgtgtgaaatgaacaaaagactcacttaaaatgggacggagggagtat 79  Q
    |||||||||||||||| ||| |||||| ||||  |||||||||||||||||    
T  7042895 atatgtgtgaaatgaataaatgactcatttaatttgggacggagggagtat 7042945  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 73
Target Start/End: Original strand, 8840468 - 8840512
Alignment:
Q  28 aatatgtgtgaaatgaacaaaagactcacttaaaatgggacggagg 73  Q
    |||||||||||||||| |||||| |||||||| |||||||||||||    
T  8840468 aatatgtgtgaaatga-caaaaggctcacttataatgggacggagg 8840512  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 78
Target Start/End: Complemental strand, 36011954 - 36011909
Alignment:
Q  34 tgtgaaatgaacaaaagactc-acttaaaatgggacggagggagta 78  Q
    ||||||||||||||||||||  ||||||||||||||||||| ||||    
T  36011954 tgtgaaatgaacaaaagacttgacttaaaatgggacggaggaagta 36011909  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000008; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 31 - 79
Target Start/End: Original strand, 29444183 - 29444231
Alignment:
Q  31 atgtgtgaaatgaacaaaagactcacttaaaatgggacggagggagtat 79  Q
    ||||||||||||||||||||||||| |||| |||| |||||||||||||    
T  29444183 atgtgtgaaatgaacaaaagactcagttaatatggaacggagggagtat 29444231  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 33 - 79
Target Start/End: Original strand, 34703747 - 34703793
Alignment:
Q  33 gtgtgaaatgaacaaaagactcacttaaaatgggacggagggagtat 79  Q
    |||||||||||||||||  |||||||||| |||||||||||||||||    
T  34703747 gtgtgaaatgaacaaaatgctcacttaaattgggacggagggagtat 34703793  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 28 - 79
Target Start/End: Original strand, 16126352 - 16126403
Alignment:
Q  28 aatatgtgtgaaatgaacaaaagactcacttaaaatgggacggagggagtat 79  Q
    |||| ||||||||||||||||| | ||| |||||||| ||||||||||||||    
T  16126352 aatacgtgtgaaatgaacaaaatagtcagttaaaatgagacggagggagtat 16126403  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 28 - 79
Target Start/End: Complemental strand, 41594814 - 41594763
Alignment:
Q  28 aatatgtgtgaaatgaacaaaagactcacttaaaatgggacggagggagtat 79  Q
    ||||| ||||||||||||||||| ||| |||| |||||||||||||||||||    
T  41594814 aatatatgtgaaatgaacaaaaggctcgcttataatgggacggagggagtat 41594763  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 28 - 79
Target Start/End: Original strand, 46958860 - 46958911
Alignment:
Q  28 aatatgtgtgaaatgaacaaaagactcacttaaaatgggacggagggagtat 79  Q
    |||||||||||||||||||||| ||||| |||||| ||||||||| ||||||    
T  46958860 aatatgtgtgaaatgaacaaaatactcagttaaaaggggacggagagagtat 46958911  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 28 - 78
Target Start/End: Complemental strand, 5499399 - 5499349
Alignment:
Q  28 aatatgtgtgaaatgaacaaaagactcacttaaaatgggacggagggagta 78  Q
    ||||||||| ||||||||||||| |||  ||||||||||||||||||||||    
T  5499399 aatatgtgtcaaatgaacaaaaggctcggttaaaatgggacggagggagta 5499349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 78
Target Start/End: Complemental strand, 22872353 - 22872303
Alignment:
Q  28 aatatgtgtgaaatgaacaaaagactcacttaaaatgggacggagggagta 78  Q
    |||||||||||||||| |||| | |||||||||  ||||||||||||||||    
T  22872353 aatatgtgtgaaatgagcaaatggctcacttaatttgggacggagggagta 22872303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 78
Target Start/End: Complemental strand, 47277648 - 47277596
Alignment:
Q  28 aatatgtgtgaaatgaacaaaagactcact--taaaatgggacggagggagta 78  Q
    |||||||||||||||| |||||| ||||||  || ||||||||||||||||||    
T  47277648 aatatgtgtgaaatgagcaaaaggctcacttatataatgggacggagggagta 47277596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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