View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20099_high_12 (Length: 393)
Name: NF20099_high_12
Description: NF20099
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20099_high_12 |
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Alignment Details
Target: chr5 (Bit Score: 160; Significance: 4e-85; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 25 - 207
Target Start/End: Complemental strand, 7829651 - 7829468
Alignment:
| Q |
25 |
gctgtatagatatcttctctaagaaaatagctatatagatatcttttctctttaattatatgaaacatataataggactatttttcaccgaactttttat |
124 |
Q |
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| T |
7829651 |
gctgtatagatatcttctctcaaaaaatagctatatagatatcttttctctttaattatatgaaacatataataggactatttttcactgaactttttat |
7829552 |
T |
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| Q |
125 |
acacttgaaatgctagctagcttgatttaaagt-tttcgattattcctcgttgtatttgaaacattatcatgaataaaatgtct |
207 |
Q |
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| T |
7829551 |
acacttgaaatgctagctagcttgatttaaagtctttcgattattcctcattgtatttgaaacattatcatgaataaaatgtct |
7829468 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 222 - 375
Target Start/End: Complemental strand, 7829439 - 7829286
Alignment:
| Q |
222 |
tgtttgcaatcttaaaattctcaatacctatgattgcaagcaaaggaattcaattactttaagaattttaaatcctcttaaattttcaaattaatttatc |
321 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| |
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| T |
7829439 |
tgtttgcaatcttaaaattctcaatacctatgattgcaagcaaaggaattcaattactttaagaatttcaaatcctcttaaatttttaaattaatttatc |
7829340 |
T |
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| Q |
322 |
caaacatactcttaaagattgagtttaagttccctgaggaagatttgtaaaact |
375 |
Q |
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| T |
7829339 |
caaacacacttttaaagattgagtttaagttccctgaggaagatttgtaaaact |
7829286 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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