View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20099_high_13 (Length: 346)
Name: NF20099_high_13
Description: NF20099
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20099_high_13 |
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Alignment Details
Target: chr5 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 339
Target Start/End: Original strand, 33446015 - 33446354
Alignment:
| Q |
1 |
tttgagctgtgattctgtttgtaaatgcgatgatgacataggggttgatcaccgatggatgacatcggagttcctgaatgaaataaaatgctctggtatg |
100 |
Q |
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| T |
33446015 |
tttgagctgtgattctgtttgtaagtgtgatgatgacataggggttgatcaccgttggatcactacggagttcttgaacgatatcaaatgctctggtatg |
33446114 |
T |
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| Q |
101 |
ccaaatcatagattgatcttaaaggttggtgctcctgttatgttgcttcgcaacgttgatcaatcagctggtctttgcaatggtacgcgtttaactgtca |
200 |
Q |
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| T |
33446115 |
ccaaatcatagattgatcttgaaggttggtgttcctgttatgttgcttcgcaacgttgatcaatcggctggtctgtgcaatggtacccgtttaactgtca |
33446214 |
T |
|
| Q |
201 |
tttc-ttaggcaaaaatgtcatatgtgcgcgtattattggtggtttgcatgacggggaagttgcttacatacctcgaatgaatcttatcccgtctggtgc |
299 |
Q |
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| T |
33446215 |
tttcattgggcaaaaatgtcatatgtgcgcgtattattggtggtttgcatgatggcgaagttgcctacatacctcggatgaatctcataccatctggtgc |
33446314 |
T |
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| Q |
300 |
caatgtgtctattacatttgaacgtcgacaatttcctttg |
339 |
Q |
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| T |
33446315 |
caatgtgtctattacatttgaacgtcgacaatttcctttg |
33446354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 1 - 320
Target Start/End: Original strand, 46471238 - 46471558
Alignment:
| Q |
1 |
tttgagctgtgattctgtttgtaaatgcgatgatgacataggggttgatcaccgatggatgacatcggagttcctgaatgaaataaaatgctctggtatg |
100 |
Q |
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| T |
46471238 |
tttgagttgtgattcggtttgcaaatgcgacgatgatataggtgttgatcatcgatggattacaactgatttcttgaatgacatcaagtgttcgggaatg |
46471337 |
T |
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| Q |
101 |
ccaaatcatagattgatcttaaaggttggtgctcctgttatgttgcttcgcaacgttgatcaatcagctggtctttgcaatggtacgcgtttaactgtca |
200 |
Q |
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| T |
46471338 |
ccaaaccataggttatgtttgaaggttggagttcctgtcatgttgcttcgcaacgttgatcaagcatctggtctctgcaatggaacacgtttgattattg |
46471437 |
T |
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| Q |
201 |
t-ttcttaggcaaaaatgtcatatgtgcgcgtattattggtggtttgcatgacggggaagttgcttacatacctcgaatgaatcttatcccgtctggtgc |
299 |
Q |
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| T |
46471438 |
tctccttggggaaaaatgtgatttgtgcacgtgttattggtggtacacatgctggtgaggtttcctacattcctcggatgaatctgattccttctggtgc |
46471537 |
T |
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| Q |
300 |
caatgtgtctattacatttga |
320 |
Q |
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| T |
46471538 |
taatgtttccattacttttga |
46471558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 122 - 320
Target Start/End: Original strand, 3856327 - 3856526
Alignment:
| Q |
122 |
aaggttggtgctcctgttatgttgcttcgcaacgttgatcaatcagctggtctttgcaatggtacgcgtttaactgtcatttc-ttaggcaaaaatgtca |
220 |
Q |
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| T |
3856327 |
aaggttggagttcatgtcatgttgcttcgcaacgttgatcaagcatctggtctctgcaatggaacgcgtttgattattgtctctttggggaaaaatgtga |
3856426 |
T |
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| Q |
221 |
tatgtgcgcgtattattggtggtttgcatgacggggaagttgcttacatacctcgaatgaatcttatcccgtctggtgccaatgtgtctattacatttga |
320 |
Q |
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| T |
3856427 |
tttgtgcacgtgttattggtggtgcacatgctggtgaggttgtctacattcctcggatgaatctgatcccttctggtgctaatgtttccattacgtttga |
3856526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 10 - 163
Target Start/End: Original strand, 18046223 - 18046376
Alignment:
| Q |
10 |
tgattctgtttgtaaatgcgatgatgacataggggttgatcaccgatggatgacatcggagttcctgaatgaaataaaatgctctggtatgccaaatcat |
109 |
Q |
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|||||| ||||||||||| || || ||| | || ||||||| || ||||| ||| | ||||| ||||||| || ||||| || ||||||||||||||| |
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| T |
18046223 |
tgattcagtttgtaaatgtgacgacgactttggtcttgatcatcgttggattacaactgagtttttgaatgacattaaatgttcaggtatgccaaatcat |
18046322 |
T |
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| Q |
110 |
agattgatcttaaaggttggtgctcctgttatgttgcttcgcaacgttgatcaa |
163 |
Q |
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| T |
18046323 |
aggctcattctgaaggttggtgttcctattatgttgcttcggaatgttgatcaa |
18046376 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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