View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20099_high_24 (Length: 302)

Name: NF20099_high_24
Description: NF20099
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20099_high_24
NF20099_high_24
[»] chr2 (7 HSPs)
chr2 (5-289)||(27724477-27724761)
chr2 (64-289)||(27735719-27735950)
chr2 (85-134)||(7435557-7435606)
chr2 (5-139)||(27717303-27717438)
chr2 (85-134)||(7524386-7524435)
chr2 (85-141)||(16920702-16920758)
chr2 (79-165)||(27595668-27595754)
[»] chr8 (1 HSPs)
chr8 (83-289)||(14682135-14682341)
[»] chr1 (3 HSPs)
chr1 (82-139)||(19225744-19225801)
chr1 (67-139)||(19221209-19221281)
chr1 (85-126)||(344828-344869)
[»] chr5 (5 HSPs)
chr5 (84-143)||(37512600-37512659)
chr5 (84-141)||(32642642-32642699)
chr5 (91-140)||(42782935-42782984)
chr5 (91-140)||(41227659-41227708)
chr5 (84-140)||(42565277-42565333)
[»] chr4 (2 HSPs)
chr4 (84-126)||(4877550-4877592)
chr4 (85-150)||(48742276-48742341)
[»] chr7 (1 HSPs)
chr7 (85-140)||(42446026-42446081)
[»] chr6 (2 HSPs)
chr6 (85-140)||(32745195-32745250)
chr6 (85-142)||(32961060-32961117)
[»] scaffold0054 (1 HSPs)
scaffold0054 (85-141)||(33777-33833)


Alignment Details
Target: chr2 (Bit Score: 269; Significance: 1e-150; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 5 - 289
Target Start/End: Complemental strand, 27724761 - 27724477
Alignment:
Q  5 atgactataaggtcattcaatatgttgtttatattggaggttgtgaagatgagtggcaagttgcaccgcccggtccctattgggatatatatagtctaag 104  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27724761 atgactacaaggtcattcaatatgttgtttatattggaggttgtgaagatgagtggcaagttgcaccgcccggtccctattgggatatatatagtctaag 27724662  T
Q  105 aagtaactcttggaagaaactttatgttgatatgccacaacgttatttgacttcggaaggttctatggtgtacttaaatggggtttgtcattggtgggga 204  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  27724661 aagtaactcttggaaaaaactttatgttgatatgccacaacgttatttgacttcggaaggttctatggtgtacttaaatggggtttgccattggtgggga 27724562  T
Q  205 aaaacatatcgtcaaccaagtgaaacatttgtggtgtcttttaacctggccactgaggtgcccgttaccactctttttccctttg 289  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  27724561 aaaacatatcgtcaaccaagtgaaacatttgtggtgtcttttaacctggccactgaggtgcccgttactactctttttccctttg 27724477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 64 - 289
Target Start/End: Complemental strand, 27735950 - 27735719
Alignment:
Q  64 gttgcaccgcccggtccctattgggatatatatagtctaagaagtaactcttggaagaaactttatgttgatatgccacaacgttatttgacttcggaag 163  Q
    |||||||| ||||| ||||||||||| ||||||||||||   ||||||  ||||||||||||||||||||||||||  ||||||||||||||||||||||    
T  27735950 gttgcaccacccggcccctattgggaaatatatagtctacagagtaaccgttggaagaaactttatgttgatatgcggcaacgttatttgacttcggaag 27735851  T
Q  164 gttctatggtgtacttaaatggggtttgtcattggtggggaaaaacatatc------gtcaaccaagtgaaacatttgtggtgtcttttaacctggccac 257  Q
    ||||||||||||| |||||||||||||| |||||||||||||| |||||||      |   ||||||||||||||||||||||||||||||||||||||     
T  27735850 gttctatggtgtatttaaatggggtttgccattggtggggaaacacatatctaatgggaataccaagtgaaacatttgtggtgtcttttaacctggccaa 27735751  T
Q  258 tgaggtgcccgttaccactctttttccctttg 289  Q
    ||||||||| ||||||||||| ||||||||||    
T  27735750 tgaggtgcctgttaccactctctttccctttg 27735719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 85 - 134
Target Start/End: Complemental strand, 7435606 - 7435557
Alignment:
Q  85 tgggatatatatagtctaagaagtaactcttggaagaaactttatgttga 134  Q
    ||||| ||||||||||||||||| |||||||||||||||||| |||||||    
T  7435606 tgggagatatatagtctaagaagcaactcttggaagaaacttgatgttga 7435557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 5 - 139
Target Start/End: Complemental strand, 27717438 - 27717303
Alignment:
Q  5 atgactataaggtcattcaatatgttgtttatattggaggttgtgaagatgagtggcaagttgcaccgcccggtccctattgggatatatatagtctaag 104  Q
    ||||||||||  ||||||||||||| | |||||  ||| ||| |  |||| | || ||||  ||| |||| || ||||||||| |||||||||||||||     
T  27717438 atgactataaaatcattcaatatgtagattataccggatgttttatagattattgtcaagaagcatcgcctggcccctattggtatatatatagtctaaa 27717339  T
Q  105 aagtaact-cttggaagaaactttatgttgatatgc 139  Q
    ||  || | |||||||||||||||||||||||||||    
T  27717338 aaaaaaattcttggaagaaactttatgttgatatgc 27717303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 85 - 134
Target Start/End: Complemental strand, 7524435 - 7524386
Alignment:
Q  85 tgggatatatatagtctaagaagtaactcttggaagaaactttatgttga 134  Q
    ||||| |||||||| |||||||| |||||||||||||||||| |||||||    
T  7524435 tgggaaatatatagcctaagaagcaactcttggaagaaacttgatgttga 7524386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 85 - 141
Target Start/End: Original strand, 16920702 - 16920758
Alignment:
Q  85 tgggatatatatagtctaagaagtaactcttggaagaaactttatgttgatatgcca 141  Q
    ||||| |||||||||||||||||||| ||||||| ||||||| || |||| ||||||    
T  16920702 tgggagatatatagtctaagaagtaattcttggaggaaacttgatattgaaatgcca 16920758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 79 - 165
Target Start/End: Complemental strand, 27595754 - 27595668
Alignment:
Q  79 ccctattgggatatatatagtctaagaagtaactcttggaagaaactttatgttgatatgccacaacgttatttgacttcggaaggt 165  Q
    ||||||||||| ||||||||| ||   ||||||| |||| ||| ||||||||||||||||| ||| |||| || || ||||| ||||    
T  27595754 ccctattgggaaatatatagtttagagagtaacttttgggagacactttatgttgatatgcgacatcgtttttggagttcggtaggt 27595668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 151; Significance: 6e-80; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 83 - 289
Target Start/End: Complemental strand, 14682341 - 14682135
Alignment:
Q  83 attgggatatatatagtctaagaagtaactcttggaagaaactttatgttgatatgccacaacgttatttgacttcggaaggttctatggtgtacttaaa 182  Q
    ||||||| |||||||||||| ||||||||  ||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  14682341 attgggacatatatagtctacgaagtaaccattggaagaaactttacgttgatatgcgacaacgttatttgacttcggaaggttctatggtgtacttaaa 14682242  T
Q  183 tggggtttgtcattggtggggaaaaacatatcgtcaaccaagtgaaacatttgtggtgtcttttaacctggccactgaggtgcccgttaccactcttttt 282  Q
    ||||||||| |||||||||||||||| |||||||||||||| |||||||||||||||||||||| ||||||||| |||||| || ||||||||||| |||    
T  14682241 tggggtttgccattggtggggaaaaatatatcgtcaaccaattgaaacatttgtggtgtcttttgacctggccaatgaggttcctgttaccactctcttt 14682142  T
Q  283 ccctttg 289  Q
    |||||||    
T  14682141 ccctttg 14682135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 3e-17; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 82 - 139
Target Start/End: Complemental strand, 19225801 - 19225744
Alignment:
Q  82 tattgggatatatatagtctaagaagtaactcttggaagaaactttatgttgatatgc 139  Q
    |||||||| ||||||||||||| ||||||||||||||| |||||||||||||||||||    
T  19225801 tattgggacatatatagtctaaaaagtaactcttggaaaaaactttatgttgatatgc 19225744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 67 - 139
Target Start/End: Original strand, 19221209 - 19221281
Alignment:
Q  67 gcaccgcccggtccctattgggatatatatagtctaagaagtaactcttggaagaaactttatgttgatatgc 139  Q
    ||||||||||| || |||||||| ||||||||||||||  ||||||||||||| |||||| ||||||||||||    
T  19221209 gcaccgcccggcccttattgggacatatatagtctaaggcgtaactcttggaaaaaacttcatgttgatatgc 19221281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 85 - 126
Target Start/End: Original strand, 344828 - 344869
Alignment:
Q  85 tgggatatatatagtctaagaagtaactcttggaagaaactt 126  Q
    ||||| ||||| ||||||| ||||||||||||||||||||||    
T  344828 tgggagatatacagtctaaaaagtaactcttggaagaaactt 344869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 84 - 143
Target Start/End: Original strand, 37512600 - 37512659
Alignment:
Q  84 ttgggatatatatagtctaagaagtaactcttggaagaaactttatgttgatatgccaca 143  Q
    ||||||||||||||| |||||||| ||||||||||  |||||| ||||| ||||||||||    
T  37512600 ttgggatatatatagcctaagaagcaactcttggagaaaacttgatgttaatatgccaca 37512659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 84 - 141
Target Start/End: Original strand, 32642642 - 32642699
Alignment:
Q  84 ttgggatatatatagtctaagaagtaactcttggaagaaactttatgttgatatgcca 141  Q
    |||||| ||||||||| ||||||||||||||||||  |||||| |||||| |||||||    
T  32642642 ttgggagatatatagtttaagaagtaactcttggagaaaacttgatgttgttatgcca 32642699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 91 - 140
Target Start/End: Original strand, 42782935 - 42782984
Alignment:
Q  91 atatatagtctaagaagtaactcttggaagaaactttatgttgatatgcc 140  Q
    ||||| |||||||||||||||||||||| ||||||| |||||| ||||||    
T  42782935 atatacagtctaagaagtaactcttggaggaaacttgatgttgttatgcc 42782984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 91 - 140
Target Start/End: Original strand, 41227659 - 41227708
Alignment:
Q  91 atatatagtctaagaagtaactcttggaagaaactttatgttgatatgcc 140  Q
    ||||| ||||||||||||||| |||||| ||||||| |||||| ||||||    
T  41227659 atatacagtctaagaagtaacccttggaggaaacttgatgttgttatgcc 41227708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 84 - 140
Target Start/End: Complemental strand, 42565333 - 42565277
Alignment:
Q  84 ttgggatatatatagtctaagaagtaactcttggaagaaactttatgttgatatgcc 140  Q
    |||||| || ||||| |||||||| ||||||||||| |||||| ||| |||||||||    
T  42565333 ttgggagatttatagcctaagaagcaactcttggaataaacttgatgctgatatgcc 42565277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 84 - 126
Target Start/End: Original strand, 4877550 - 4877592
Alignment:
Q  84 ttgggatatatatagtctaagaagtaactcttggaagaaactt 126  Q
    |||||| || |||||||||||||||||||||||||||||||||    
T  4877550 ttgggagatttatagtctaagaagtaactcttggaagaaactt 4877592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 85 - 150
Target Start/End: Complemental strand, 48742341 - 48742276
Alignment:
Q  85 tgggatatatatagtctaagaagtaactcttggaagaaactttatgttgatatgccacaacgttat 150  Q
    ||||| ||||| |||||||||||||||||||||| |||| || || | |||||||| ||| |||||    
T  48742341 tgggagatatacagtctaagaagtaactcttggaggaaaattgatctggatatgcctcaatgttat 48742276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 85 - 140
Target Start/End: Original strand, 42446026 - 42446081
Alignment:
Q  85 tgggatatatatagtctaagaagtaactcttggaagaaactttatgttgatatgcc 140  Q
    ||||| ||||||||||||||||||||| | |||| ||||||| ||||||| |||||    
T  42446026 tgggagatatatagtctaagaagtaacccgtggaggaaacttgatgttgacatgcc 42446081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 85 - 140
Target Start/End: Complemental strand, 32745250 - 32745195
Alignment:
Q  85 tgggatatatatagtctaagaagtaactcttggaagaaactttatgttgatatgcc 140  Q
    ||||| |||||||| |||||||||||||| |||| ||||||| ||||||| |||||    
T  32745250 tgggagatatatagcctaagaagtaactcctggaggaaacttgatgttgacatgcc 32745195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 85 - 142
Target Start/End: Complemental strand, 32961117 - 32961060
Alignment:
Q  85 tgggatatatatagtctaagaagtaactcttggaagaaactttatgttgatatgccac 142  Q
    ||||| ||||||||  ||||||||||||| |||| ||||||| ||||||| |||||||    
T  32961117 tgggagatatatagcgtaagaagtaactcgtggaggaaacttgatgttgacatgccac 32961060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 85 - 141
Target Start/End: Complemental strand, 33833 - 33777
Alignment:
Q  85 tgggatatatatagtctaagaagtaactcttggaagaaactttatgttgatatgcca 141  Q
    ||||| |||||||| |||||||||||||| |||| ||||||| || |||| ||||||    
T  33833 tgggagatatatagcctaagaagtaactcgtggaggaaacttgatattgacatgcca 33777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University