View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20099_high_31 (Length: 248)
Name: NF20099_high_31
Description: NF20099
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20099_high_31 |
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Alignment Details
Target: chr3 (Bit Score: 143; Significance: 3e-75; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 2593070 - 2592841
Alignment:
| Q |
1 |
ttattctctattgaaatcctagattgttaacatgatatcagagcttattttgatcctccttaatagtttgttaattctgctgttgaattgccacaagttt |
100 |
Q |
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| T |
2593070 |
ttattctctattgaaaccctagattgttaacatgatattagagcttgttttgatcctccttaatagtt-gttaatttcgttgttgaattgccacaagttc |
2592972 |
T |
|
| Q |
101 |
ggggcttttatttgctttgtcttttaaggtctgattatcttgatttgttcttttgttagtaattttggttctctttattggttgttatccattttcaatt |
200 |
Q |
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|||| ||||||||||||||||||||||||||| || ||||||||||||| |||||| |||||||| ||||| || | | |||||| ||||||||| ||| |
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| T |
2592971 |
gggggttttatttgctttgtcttttaaggtcttataatcttgatttgttgttttgtcagtaatttcggttccctctgtcggttgtcatccattttttatt |
2592872 |
T |
|
| Q |
201 |
tgggtttgtgaaagttttattggtctttttc |
231 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
2592871 |
tgggtttgtgaaagttttattggtctttttc |
2592841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 85 - 230
Target Start/End: Complemental strand, 2594308 - 2594163
Alignment:
| Q |
85 |
gaattgccacaagtttggggcttttatttgctttgtcttttaaggtctgattatcttgatttgttcttttgttagtaattttggttctctttattggttg |
184 |
Q |
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||||| |||||||||||||| || ||||||||||||||||| | || ||||| ||||||||||||||||||| |||||||||||||| |||||||||||| |
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| T |
2594308 |
gaattcccacaagtttgggggttgtatttgctttgtcttttgaagtttgattctcttgatttgttcttttgtcagtaattttggttccctttattggttg |
2594209 |
T |
|
| Q |
185 |
ttatccattttcaatttgggtttgtgaaagttttattggtcttttt |
230 |
Q |
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| T |
2594208 |
ccttccattttcgatttgggtttgtgaaagttttattggtcttttt |
2594163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 188 - 229
Target Start/End: Original strand, 26402657 - 26402698
Alignment:
| Q |
188 |
tccattttcaatttgggtttgtgaaagttttattggtctttt |
229 |
Q |
| |
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||||||||| |||||| ||||||||| ||||||||||||||| |
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| T |
26402657 |
tccattttcgatttggttttgtgaaatttttattggtctttt |
26402698 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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