View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20099_high_35 (Length: 235)
Name: NF20099_high_35
Description: NF20099
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20099_high_35 |
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Alignment Details
Target: chr2 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 32145771 - 32145541
Alignment:
| Q |
1 |
acgtccaaggtttcatggattccgttaaaacctctaccattcaattcccactgc-ccactctgatttcatcagctgacctagttatagacatcaattcgt |
99 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32145771 |
acgtccaaggtttcatggattccgttaaaacctctaccattcaattcccgttgcgccactctgatttcatcagctgacctagttatagacatcaattcgt |
32145672 |
T |
|
| Q |
100 |
tgagatgagtgagattgcatactccttctatcacatggtcatcattctctgaggttcattgtgaatcctcatgctacgatccaatgaaataaccttacac |
199 |
Q |
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|||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||| |
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| T |
32145671 |
tgagatgagtgagactccatactccttctatcacatggtcatcattctctgaggttcattgtgaatcctcgtgctacgatccaatgaaacaaccttacac |
32145572 |
T |
|
| Q |
200 |
tcttttccgcttcctaaaagcgctacctttg |
230 |
Q |
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|| |||||||||||||||||||||||||||| |
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| T |
32145571 |
tcctttccgcttcctaaaagcgctacctttg |
32145541 |
T |
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