View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20099_high_4 (Length: 581)
Name: NF20099_high_4
Description: NF20099
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20099_high_4 |
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| [»] scaffold0363 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 381; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 87 - 504
Target Start/End: Original strand, 4202961 - 4203378
Alignment:
| Q |
87 |
ggcaaacatctccacctcccgttctcgacgacgtgtcgaaggaatccaagtactcttcaaatgagtactacaatcataaccacgtcccttacaacaagtc |
186 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4202961 |
ggcaaacatctccacctcccgttctcgacgacgtgtcgaaggaatccaagtactcttcaaatgagtactacaatcataaccacgtcccttacaacaagtc |
4203060 |
T |
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| Q |
187 |
ctacatcttctaaacacacaatctttcttagccctattaccacaatcttgacaaactctatactcagaaccatacacaccattttcttcactctccatca |
286 |
Q |
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| T |
4203061 |
ctacatcttctaaacacacaatctttcttagccctattaccacaatcttgacacactctatactcagaaccatacacaccattttcttcactctccatca |
4203160 |
T |
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| Q |
287 |
tagcaatttttccatgattctcttcttcattgatcactccnnnnnnnggaagattcactacttcaggacacatcctaaggttccaaaaattgttattgtt |
386 |
Q |
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| T |
4203161 |
tagcaatttttccatgattctcttcttcagtgatcactcctttttttggaagattcactacttcaggacacatcctaagattccaaaaattgttattgtt |
4203260 |
T |
|
| Q |
387 |
actaggattttcttgaacttcattgttttgagattgttgttgtggcatgcaaggtgtagcagtgagaagtggaaaaatgccaaaaccaacacttaaggaa |
486 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
4203261 |
actaggattttcttgaacttcattgttttgagattgttgttgtggcatgcaaggtgtagcagtgagaagtggaaaaatgccaaaaccaacacttaatgaa |
4203360 |
T |
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| Q |
487 |
gctgatgaaggtaaagag |
504 |
Q |
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| T |
4203361 |
gctgatgaaggtaaagag |
4203378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 4202887 - 4202944
Alignment:
| Q |
1 |
gcagcattttgggatgaccctaataaacctttttgtctcttaacaccagaacaaccct |
58 |
Q |
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| T |
4202887 |
gcagcattttgtgatgaccctaataaacctttttgtctcttaacaccagaacaaccct |
4202944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0363 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold0363
Description:
Target: scaffold0363; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 130 - 252
Target Start/End: Original strand, 16960 - 17082
Alignment:
| Q |
130 |
atccaagtactcttcaaatgagtactacaatcataaccacgtcccttacaacaagtcctacatcttctaaacacacaatctttcttagccctattaccac |
229 |
Q |
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| T |
16960 |
atccacgtgctcttcacgtgagtactacaatcaaatccacgacctttacaacaagtcctacatcttttatagctacaatctttcttagctctatttccac |
17059 |
T |
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| Q |
230 |
aatcttgacaaactctatactca |
252 |
Q |
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| T |
17060 |
aatcttgacaaaccctaaactca |
17082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 130 - 252
Target Start/End: Complemental strand, 14512853 - 14512731
Alignment:
| Q |
130 |
atccaagtactcttcaaatgagtactacaatcataaccacgtcccttacaacaagtcctacatcttctaaacacacaatctttcttagccctattaccac |
229 |
Q |
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||||| || ||||||| ||||||||||||||| | ||||| || ||||||||||||||||||||| || | ||||||||||||||| ||||| |||| |
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| T |
14512853 |
atccacgtgctcttcacgtgagtactacaatcaaatccacgacctttacaacaagtcctacatcttttatagctacaatctttcttagctctatttccac |
14512754 |
T |
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| Q |
230 |
aatcttgacaaactctatactca |
252 |
Q |
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| T |
14512753 |
aatcttgacaaaccctaaactca |
14512731 |
T |
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