View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20099_low_1 (Length: 1302)
Name: NF20099_low_1
Description: NF20099
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20099_low_1 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 737; Significance: 0; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 737; E-Value: 0
Query Start/End: Original strand, 162 - 942
Target Start/End: Complemental strand, 45512138 - 45511363
Alignment:
| Q |
162 |
aagttttgttgtatttatgcagagttgggtgcaaaagaagtggaaacataagatttactataaatgggagagactattttgagttggttcttataagtaa |
261 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45512138 |
aagttttgttgtatttatgcagagttgggtgcaaaagaagtggaaacataagatttactataaatgggagagactattttgagttggttcttataagtaa |
45512039 |
T |
|
| Q |
262 |
cgtagggggaggtggagagatttcaaaagtttggataaaaggatcaaaaaagaataaatgggaaccaatgtcaatgaattggggtgctaattggcaaagc |
361 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45512038 |
cgtagggggaggtggagagatttcaaaagtttggataaaaggatcaaaaaagaataaatgggaaccaatgtcaatgaattggggtgctaattggcaaagc |
45511939 |
T |
|
| Q |
362 |
ctaagctatctcaatggtcaaagcttatcatttagaattcaactcaaaaatgggaagactcgtacagctattaatgttgcaccttccaactggagatttg |
461 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45511938 |
ctaagctatctcaatggtcaaagcttatcatttagaattcaactcaaaaatgggaagactcgtacagctattaatgttgcaccttccaactggagatttg |
45511839 |
T |
|
| Q |
462 |
gccagtcttacaaaagtgacgttcagttctgattctgagcacatatgagttatgatatgaatcacttctattattgtgcattcttctatttcagttcttt |
561 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45511838 |
gccagtcttacaaaagtaacgttcagttctgattctgagcacatatgagttatgatatgaatcacttctattattgtgcattcttctatttcagttcttt |
45511739 |
T |
|
| Q |
562 |
attatgtaacagctatatgctacttgtgttcatttgtctaaggaattgttccgtatggcagttgtttgtggctcagcaatatatattagtatttgcaatg |
661 |
Q |
| |
|
||||||||||||||||||| |||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45511738 |
attatgtaacagctatatggtacttgcgttcatttgtctaaggaattgttccatatggcagttgtttgtggctcagcaatatatattagtatttgcaatg |
45511639 |
T |
|
| Q |
662 |
aggcccaccaactttggtataatatttgtaatataatgtgtaggtgaaccaaagcatatatttaatttctattttatgtgaagtaaattaaattacgaaa |
761 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45511638 |
aggcccaccaactttggtataatatttg-----taatgtgtaggtgaaccaaagcatatatttaatttctattttatgtgaagtaaattaaattacgaaa |
45511544 |
T |
|
| Q |
762 |
tcaatgcaacgcaatatgtcttacattgttaacttatactatattacttcaacaaggaaaaatatcatgtactaaaaccggatagaaagaagagtttgaa |
861 |
Q |
| |
|
|||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45511543 |
tcaatgcaacacaatatgtcttacattgttagcttatactatattacttcaacaaggaaaaatatcatgtactaaaaccggatagaaagaagagtttgaa |
45511444 |
T |
|
| Q |
862 |
tgaccgtaacttgtgttgtgaattcagcatcaacatttttatatgtgaaaataaattagcagcaattagaccaaagtgatt |
942 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45511443 |
tgaccgtaacttgtgttgtgaattcagcatcaacatttttatatgtgaaaataaattagcagcaattagaccaaagtgatt |
45511363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 162 - 493
Target Start/End: Complemental strand, 45506678 - 45506347
Alignment:
| Q |
162 |
aagttttgttgtatttatgcagagttgggtgcaaaagaagtggaaacataagatttactataaatgggagagactattttgagttggttcttataagtaa |
261 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45506678 |
aagttttgttgtatttatgcagagttgggtgcaaaagaagtggaaacataagatttactataaatgggagagactattttgagttggttcttataagtaa |
45506579 |
T |
|
| Q |
262 |
cgtagggggaggtggagagatttcaaaagtttggataaaaggatcaaaaaagaataaatgggaaccaatgtcaatgaattggggtgctaattggcaaagc |
361 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45506578 |
cgtagggggaggtggagagatttcaaaagtttggataaaaggatcaaaaaagaataaatgggaaccaatgtcaatgaattggggtgctaattggcaaagc |
45506479 |
T |
|
| Q |
362 |
ctaagctatctcaatggtcaaagcttatcatttagaattcaactcaaaaatgggaagactcgtacagctattaatgttgcaccttccaactggagatttg |
461 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45506478 |
ctaagctatctcaatggtcaaagcttatcatttagaattcaactcaaaaatgggaagactcgtacagctattaatgttgcaccttccaactggagatttg |
45506379 |
T |
|
| Q |
462 |
gccagtcttacaaaagtgacgttcagttctga |
493 |
Q |
| |
|
||||||||||||||||| |||||||||||||| |
|
|
| T |
45506378 |
gccagtcttacaaaagtaacgttcagttctga |
45506347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 987 - 1288
Target Start/End: Complemental strand, 45511318 - 45511017
Alignment:
| Q |
987 |
tgatatttgttcacctaattcgacttaaatttgacctacatcttaaaaagagagatctcttcaatccactatcaaagagataagagagttacaagaaatt |
1086 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
45511318 |
tgatatttgttcacctaattcgacttaaatttaacctacgtcttaaaaagagagatctcttcaatccactatcaaagagataagagggttacaagaaatt |
45511219 |
T |
|
| Q |
1087 |
tacattcaacaagctctctaagaacaaacactaatttgtaccattttgcttaatctcttccctttatcaagatactaaatgattttactcactagggtgt |
1186 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45511218 |
tacattcaacaaactctctaagaacaaacactaatttgtaccattttgcttaatctcttccctttatcaagatactaaatgattttactcactagggtgt |
45511119 |
T |
|
| Q |
1187 |
ttagattatgcccttaaaagtacacaattcttaacctttgatctcctaagaattgattaaccctagtttgttcacacttccctctcaaattgtgctgaaa |
1286 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45511118 |
ttagattatgcccttaaaagtacacaattcttaacctttgatctcctaagaattgattaaccctagtttgttcacacttccctctcaaattgtgctgaaa |
45511019 |
T |
|
| Q |
1287 |
ct |
1288 |
Q |
| |
|
|| |
|
|
| T |
45511018 |
ct |
45511017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 70; E-Value: 6e-31
Query Start/End: Original strand, 2 - 87
Target Start/End: Complemental strand, 45506900 - 45506815
Alignment:
| Q |
2 |
agacctcactttgatatgactcaacctgcctttcagacaatcgccaaatacagagctggaattgttcccattttgtacaggaggta |
87 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
45506900 |
agacctcactttgatatgtctcaacctgcctttcagactattgccaaatacagagctggaattgttcccattttgtataggaggta |
45506815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 70; E-Value: 6e-31
Query Start/End: Original strand, 2 - 87
Target Start/End: Complemental strand, 45512360 - 45512275
Alignment:
| Q |
2 |
agacctcactttgatatgactcaacctgcctttcagacaatcgccaaatacagagctggaattgttcccattttgtacaggaggta |
87 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
45512360 |
agacctcactttgatatgtctcaacctgcctttcagactattgccaaatacagagctggaattgttcccattttgtataggaggta |
45512275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 622 - 682
Target Start/End: Complemental strand, 45506183 - 45506121
Alignment:
| Q |
622 |
gttgtttgtggctcagcaatatatattagtatttgcaatgagg--cccaccaactttggtata |
682 |
Q |
| |
|
|||||||||||||||||||||||| ||| ||||||| |||| | ||| |||||||||||||| |
|
|
| T |
45506183 |
gttgtttgtggctcagcaatatattttattatttgcgatgaagcccccgccaactttggtata |
45506121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 67; Significance: 4e-29; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 67; E-Value: 4e-29
Query Start/End: Original strand, 181 - 495
Target Start/End: Original strand, 38165694 - 38166008
Alignment:
| Q |
181 |
cagagttgggtgcaaaagaagtggaaacataagatttactataaatgggagagactattttgagttggttcttataagtaacgtagggggaggtggagag |
280 |
Q |
| |
|
|||||||| |||||||| ||||||| ||||||||||| || ||||| |||||||||||||| | || |||||||| || |||||||||| || || |
|
|
| T |
38165694 |
cagagttgagtgcaaaaaaagtggaggcataagatttaaaatcaatggaagagactattttgaactagtgcttataagcaatgtagggggagcaggtgat |
38165793 |
T |
|
| Q |
281 |
atttcaaaagtttggataaaaggatcaaaaaagaataaatgggaaccaatgtcaatgaattggggtgctaattggcaaagcctaagctatctcaatggtc |
380 |
Q |
| |
|
|| || ||||||||||| ||||| || |||| || || |||||| | ||||||| |||||||||||||| ||||||||| |||||||||| ||||||| |
|
|
| T |
38165794 |
atctccaaagtttggatcaaagggtctaaaatgagaaactgggaatctatgtcaagaaattggggtgctaactggcaaagcttaagctatctaaatggtc |
38165893 |
T |
|
| Q |
381 |
aaagcttatcatttagaattcaactcaaaaatgggaagactcgtacagctattaatgttgcaccttccaactggagatttggccagtcttacaaaagtga |
480 |
Q |
| |
|
| || | || || ||| | ||||||| ||||| ||||||| || ||| ||||||| | ||| || | ||||||||||| ||||||| || || | |
|
|
| T |
38165894 |
agagtctgtccttcagagtccaactcagtaatggaaagactctcacggctgttaatgtggtaccctctagttggagatttggtcagtctttcatcagcaa |
38165993 |
T |
|
| Q |
481 |
cgttcagttctgatt |
495 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
38165994 |
ggttcagttctgatt |
38166008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 60; E-Value: 6e-25
Query Start/End: Original strand, 287 - 470
Target Start/End: Original strand, 38118164 - 38118347
Alignment:
| Q |
287 |
aaagtttggataaaaggatcaaaaaagaataaatgggaaccaatgtcaatgaattggggtgctaattggcaaagcctaagctatctcaatggtcaaagct |
386 |
Q |
| |
|
||||||||||| ||||| || |||| ||| || |||||| | ||||||| ||||||||||| ||| ||||||||| | |||||||| |||||||| ||| |
|
|
| T |
38118164 |
aaagtttggatcaaagggtctaaaatgaaaaactgggaaaccatgtcaaggaattggggtgttaactggcaaagcttgagctatctaaatggtcagagcc |
38118263 |
T |
|
| Q |
387 |
tatcatttagaattcaactcaaaaatgggaagactcgtacagctattaatgttgcaccttccaactggagatttggccagtctt |
470 |
Q |
| |
|
| || || ||| | ||||||| ||||| ||||||||||||||||||||||| | ||| || | ||||||||||| ||||||| |
|
|
| T |
38118264 |
tgtccttcagagtccaactcagtaatggaaagactcgtacagctattaatgtggtaccctctagttggagatttggtcagtctt |
38118347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000005
Query Start/End: Original strand, 1036 - 1086
Target Start/End: Original strand, 12660513 - 12660563
Alignment:
| Q |
1036 |
gagagatctcttcaatccactatcaaagagataagagagttacaagaaatt |
1086 |
Q |
| |
|
|||||||||||||||| |||||||||||||||| ||||||||||||||| |
|
|
| T |
12660513 |
gagagatctcttcaattcactatcaaagagatacatgagttacaagaaatt |
12660563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 1075 - 1133
Target Start/End: Original strand, 9210576 - 9210634
Alignment:
| Q |
1075 |
ttacaagaaatttacattcaacaagctctctaagaacaaacactaatttgtaccatttt |
1133 |
Q |
| |
|
|||||||||||| |||||||||| ||||||||||||||| || |||| ||||||||| |
|
|
| T |
9210576 |
ttacaagaaattaccattcaacaaattctctaagaacaaactcttatttctaccatttt |
9210634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 1076 - 1171
Target Start/End: Complemental strand, 28470935 - 28470840
Alignment:
| Q |
1076 |
tacaagaaatttacattcaacaagctctctaagaacaaacactaatttgtaccattttgcttaatctcttccctttatcaagatactaaatgattt |
1171 |
Q |
| |
|
||||||||||| | ||||||||||||||||||| ||||| ||||||| ||||||||| | ||||||||| || | ||||| ||| |||||||| |
|
|
| T |
28470935 |
tacaagaaattagctttcaacaagctctctaagagcaaaccctaatttctaccattttaccgaatctcttctctcaaccaagagacttaatgattt |
28470840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000008
Query Start/End: Original strand, 1073 - 1133
Target Start/End: Complemental strand, 5566918 - 5566858
Alignment:
| Q |
1073 |
agttacaagaaatttacattcaacaagctctctaagaacaaacactaatttgtaccatttt |
1133 |
Q |
| |
|
|||||||| ||||| || ||||||||| | ||||||||||||| ||||||| ||||||||| |
|
|
| T |
5566918 |
agttacaataaattaaccttcaacaagttttctaagaacaaactctaatttctaccatttt |
5566858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 1091 - 1133
Target Start/End: Original strand, 16641049 - 16641091
Alignment:
| Q |
1091 |
ttcaacaagctctctaagaacaaacactaatttgtaccatttt |
1133 |
Q |
| |
|
|||||||||||| | |||||||||||||||||| ||||||||| |
|
|
| T |
16641049 |
ttcaacaagctcacaaagaacaaacactaatttctaccatttt |
16641091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 1091 - 1133
Target Start/End: Original strand, 54739065 - 54739107
Alignment:
| Q |
1091 |
ttcaacaagctctctaagaacaaacactaatttgtaccatttt |
1133 |
Q |
| |
|
|||||||||||| | |||||||||||||||||| ||||||||| |
|
|
| T |
54739065 |
ttcaacaagctcacaaagaacaaacactaatttctaccatttt |
54739107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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