View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20099_low_10 (Length: 512)
Name: NF20099_low_10
Description: NF20099
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20099_low_10 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 451; Significance: 0; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 451; E-Value: 0
Query Start/End: Original strand, 10 - 493
Target Start/End: Original strand, 45275308 - 45275791
Alignment:
| Q |
10 |
gcacagagctaagagtttcatggcagagtttctggtcttgtgcgttttggcacataattctaagatttctttgttgagtttgaacctcagggtctttacc |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45275308 |
gcacagagctaagagtttcatggcagagtttctggtcttgtgcgttttggcacataattctaagatttctttgttgagtttgaacctcagggtctttacc |
45275407 |
T |
|
| Q |
110 |
atttttgcgaatgtcgacaacaacaccgatgataacacctacaacgagaataagagaaactgcggagataattacctttcccttcannnnnnnaggctta |
209 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||| |
|
|
| T |
45275408 |
atttttgtgaatgtcgacaacaacaccgatgataacacctacaacgagaataagagaaacggcggagataattacctttcccttcatttttttaggctta |
45275507 |
T |
|
| Q |
210 |
ctggagattattggagatccttgcagagttctgggatgatgttatggtttttatacgttatcaacaaaagtttcaaccaaccaaagtaaattctatattt |
309 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45275508 |
ttggagattattggagatccttgcagagttctgggatgatgttatggtttttatacgttatcaacaaaagtttcaaccaaccaaagtaaattctatattt |
45275607 |
T |
|
| Q |
310 |
ggcaattttttagatgataggcacataatagtcgtaaacttctcagttaattttaggaatgagttgaaacactatctaccactattactgttatgagtag |
409 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45275608 |
ggcaattttttagatgataggcacataatagtcgtaaacttctcagttaattttaggaatgagttgaaacactatctaccactattactgttatgagtag |
45275707 |
T |
|
| Q |
410 |
aaaaaattctcattattgaaatgaatgtgctaattgaattacaaagtggtacttcatcaaatatatactcagtgaagtccctaa |
493 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45275708 |
aaaaaattctcattattgaaatgaatgtgctaattgaattacaaagtggtacttcatcaaatatatactcagtgaagtccctaa |
45275791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 10 - 493
Target Start/End: Original strand, 45271775 - 45272251
Alignment:
| Q |
10 |
gcacagagctaagagtttcatggcagagtttctggtcttgtgcgttttggcacataattctaagatttctttgttgagtttgaacctcagggtctttacc |
109 |
Q |
| |
|
|||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| |
|
|
| T |
45271775 |
gcacagagctaagagtgtcatgacagagtttctggtcttgtgcgttttggcacataattctaagatttctttgttgagtttgaaccttagggtcttcacc |
45271874 |
T |
|
| Q |
110 |
atttttgcgaatgtcgacaacaacaccgatgataacacctacaacgagaataagagaaactgcggagataattacctttcccttca-nnnnnnnaggctt |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | |||| |
|
|
| T |
45271875 |
atttttgcgaatgtcgacaacaacaccgatgataacacctacaacgagaataagagaaacaacggagataattacctttcccttcattttttttacgctt |
45271974 |
T |
|
| Q |
209 |
actggagattattggagatccttgcagagttctgggatgatgttatggtttttatacgttatcaacaaaagtttcaaccaaccaaagtaaattctatatt |
308 |
Q |
| |
|
| |||||||||||||||||||||||||||| |||||||||| ||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
45271975 |
ataggagattattggagatccttgcagagttatgggatgatggtatggtttttataggttatcaaaaaaagtttcaaccaaccaaagtaaattctatatt |
45272074 |
T |
|
| Q |
309 |
tggcaattttttagatgataggcacataatagtcgtaaacttctcagttaattttaggaatgagttgaaacactatctaccactattac---------tg |
399 |
Q |
| |
|
|||||||||||||||||||||| || ||||||||||||||||||| |||||||||||||||||||||||||| || |
|
|
| T |
45272075 |
tggcaattttttagatgataggtacgtaatagtcgtaaacttctc-----------------ggttgaaacactatctaccactattacagttaacattg |
45272157 |
T |
|
| Q |
400 |
ttatgagtagaaaaaattctcattattgaaatgaatgtgctaattgaattacaaagtggtacttcatcaaatatatactcagtgaagtccctaa |
493 |
Q |
| |
|
| ||||||||||| |||||||||||||||||| |||||||||| ||||||||||||||||| |||||||||||||||||||| ||||||||||| |
|
|
| T |
45272158 |
tgatgagtagaaacaattctcattattgaaatcaatgtgctaagtgaattacaaagtggtatttcatcaaatatatactcagcgaagtccctaa |
45272251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 10 - 191
Target Start/End: Original strand, 45283549 - 45283730
Alignment:
| Q |
10 |
gcacagagctaagagtttcatggcagagtttctggtcttgtgcgttttggcacataattctaagatttctttgttgagtttgaacctcagggtctttacc |
109 |
Q |
| |
|
|||||||||||||||||||||| |||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| |
|
|
| T |
45283549 |
gcacagagctaagagtttcatgacagagtttttggtcttgtgagttttggcacataattctaagatttctttgttgagtttgaacctcggggtcttcacc |
45283648 |
T |
|
| Q |
110 |
atttttgcgaatgtcgacaacaacaccgatgataacacctacaacgagaataagagaaactgcggagataattacctttccc |
191 |
Q |
| |
|
||||||||||| | ||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
45283649 |
atttttgcgaacggcgacaacaacaccgatggcaacacctacaacgagaataagagaaacagcggagataattacctttccc |
45283730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 217 - 395
Target Start/End: Original strand, 45295193 - 45295371
Alignment:
| Q |
217 |
ttattggagatccttgcagagttctgggatgatgttatggtttttatacgttatcaacaaaagtttcaaccaaccaaagtaaattctatatttggcaatt |
316 |
Q |
| |
|
||||||||||||| || |||||| |||||||||||||||||||||||| || || || ||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
45295193 |
ttattggagatccctgaagagttatgggatgatgttatggtttttataggtgataaaaaaaagtttctaccaaccaaagtaaattctatatttggcaatt |
45295292 |
T |
|
| Q |
317 |
ttttagatgataggcacataatagtcgtaaacttctcagttaattttaggaatgagttgaaacactatctaccactatt |
395 |
Q |
| |
|
| ||| |||||||||||||||| |||| |||||| || |||||||||||||||| ||||||||||| |||||||||||| |
|
|
| T |
45295293 |
tgttaaatgataggcacataattgtcgaaaacttatcggttaattttaggaatgggttgaaacactgtctaccactatt |
45295371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 217 - 395
Target Start/End: Original strand, 45304153 - 45304331
Alignment:
| Q |
217 |
ttattggagatccttgcagagttctgggatgatgttatggtttttatacgttatcaacaaaagtttcaaccaaccaaagtaaattctatatttggcaatt |
316 |
Q |
| |
|
||||||||||||| || |||||| |||||||||||||||||||||||| || || || ||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
45304153 |
ttattggagatccctgaagagttatgggatgatgttatggtttttataggtgataaaaaaaagtttctaccaaccaaagtaaattctatatttggcaatt |
45304252 |
T |
|
| Q |
317 |
ttttagatgataggcacataatagtcgtaaacttctcagttaattttaggaatgagttgaaacactatctaccactatt |
395 |
Q |
| |
|
| ||| |||||||||||||||| |||| |||||| || |||||||||||||||| ||||||||||| |||||||||||| |
|
|
| T |
45304253 |
tgttaaatgataggcacataattgtcgaaaacttatcggttaattttaggaatgggttgaaacactgtctaccactatt |
45304331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 217 - 392
Target Start/End: Original strand, 45283814 - 45283990
Alignment:
| Q |
217 |
ttattggagatccttgcagagttctgggatgatgttatggtttttatacgttatcaacaaaagtttcaaccaaccaaagtaaattctatatttggca-at |
315 |
Q |
| |
|
||||||||||||| || |||||| |||||||||||||||||||||||| |||||||| |||||||| |||||||||||||||||||||||| ||||| | |
|
|
| T |
45283814 |
ttattggagatccctgaagagttatgggatgatgttatggtttttataggttatcaataaaagttttaaccaaccaaagtaaattctatatctggcatgt |
45283913 |
T |
|
| Q |
316 |
tttttagatgataggcacataatagtcgtaaacttctcagttaattttaggaatgagttgaaacactatctaccact |
392 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||| |||||||| || |||| |||||||| || ||||||||| |
|
|
| T |
45283914 |
tttttagatgataggcacataattgtcgtaaacttctcggttaatttaagtaatgtgttgaaacgctgtctaccact |
45283990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 10 - 195
Target Start/End: Original strand, 45294937 - 45295122
Alignment:
| Q |
10 |
gcacagagctaagagtttcatggcagagtttctggtcttgtgcgttttggcacataattctaagatttctttgttgagtttgaacctcagggtctttacc |
109 |
Q |
| |
|
||||||||||||| ||||||||||||||||| ||||| | ||| ||||||||||||| | |||| |||||||||||||| |||||||||||||| ||| |
|
|
| T |
45294937 |
gcacagagctaagtgtttcatggcagagtttttggtcatctgcattttggcacataacttgaagagatctttgttgagttttaacctcagggtcttcacc |
45295036 |
T |
|
| Q |
110 |
atttttgcgaatgtcgacaacaacaccgatgataacacctacaacgagaataagagaaactgcggagataattacctttcccttca |
195 |
Q |
| |
|
||||||| ||| || ||| || |||||| ||||||||||||||| ||||||||||| |||||||||||||||||||| |||| |
|
|
| T |
45295037 |
atttttgtgaacagcgcaaaccacgccgatggcaacacctacaacgaggataagagaaacagcggagataattacctttccattca |
45295122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 10 - 195
Target Start/End: Original strand, 45303897 - 45304082
Alignment:
| Q |
10 |
gcacagagctaagagtttcatggcagagtttctggtcttgtgcgttttggcacataattctaagatttctttgttgagtttgaacctcagggtctttacc |
109 |
Q |
| |
|
||||||||||||| ||||||||||||||||| ||||| | ||| ||||||||||||| | |||| |||||||||||||| |||||||||||||| ||| |
|
|
| T |
45303897 |
gcacagagctaagtgtttcatggcagagtttttggtcatctgcattttggcacataacttgaagagatctttgttgagttttaacctcagggtcttcacc |
45303996 |
T |
|
| Q |
110 |
atttttgcgaatgtcgacaacaacaccgatgataacacctacaacgagaataagagaaactgcggagataattacctttcccttca |
195 |
Q |
| |
|
||||||| ||| || ||| || |||||| ||||||||||||||| ||||||||||| |||||||||||||||||||| |||| |
|
|
| T |
45303997 |
atttttgtgaacagcgcaaaccacgccgatggcaacacctacaacgaggataagagaaacagcggagataattacctttccattca |
45304082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 75; Significance: 3e-34; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 402 - 484
Target Start/End: Original strand, 7241280 - 7241362
Alignment:
| Q |
402 |
atgagtagaaaaaattctcattattgaaatgaatgtgctaattgaattacaaagtggtacttcatcaaatatatactcagtga |
484 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7241280 |
atgagtagaaacaattctcattattgaaatgaatgtgctaaatgaattacaaagtggtacttcatcaaatatatactcagtga |
7241362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 433 - 470
Target Start/End: Original strand, 26718828 - 26718865
Alignment:
| Q |
433 |
aatgtgctaattgaattacaaagtggtacttcatcaaa |
470 |
Q |
| |
|
|||||||||| |||||||||||||| |||||||||||| |
|
|
| T |
26718828 |
aatgtgctaactgaattacaaagtgatacttcatcaaa |
26718865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University