View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20099_low_12 (Length: 475)
Name: NF20099_low_12
Description: NF20099
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20099_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 277; Significance: 1e-155; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 107 - 463
Target Start/End: Complemental strand, 11001056 - 11000700
Alignment:
| Q |
107 |
atatagttacccattctaagttcgttgttgatgagtaacgttgtcatcttatcttatcttata-aattaatcttggttaattattttgcttaattccact |
205 |
Q |
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| T |
11001056 |
atatagttacccattctgagttcattgttgatgggtaacgttgtcatcttatcttatcttatataactaatcttggttaattattttgcttagttccact |
11000957 |
T |
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| Q |
206 |
attagtgttaagtaatgtgaaatgggcattccagttttagtccacacttttagttctcaagtatcatattattcagttttgatcgcattattttacataa |
305 |
Q |
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| T |
11000956 |
attagtgttaagtaatgcgaattgtgcattccagttttagtccacacttttagttctcaagtattatattattcagttttgatcgcattattttacataa |
11000857 |
T |
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| Q |
306 |
cttacgattatacaaaacaaaatagaagactaaaatttaataatcacaatatttcttaaagtatgtaatttgtttgtatgattttgtttgaaaaacaaac |
405 |
Q |
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| T |
11000856 |
cttacgattatacaaaacaaaatagaagactaaaatttaataatcacaatatttcttgaagtatgtaatttgtttgtatgattttgtttgaagaacaaac |
11000757 |
T |
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| Q |
406 |
ccatcactaaagnnnnnnnntaccaaaatgataaaccaattaattacaaagtttttca |
463 |
Q |
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| T |
11000756 |
ccatcactaaag-aaaaaaataccaaaatgataaaccaattaattacaaagtttttca |
11000700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 18 - 70
Target Start/End: Complemental strand, 11001104 - 11001052
Alignment:
| Q |
18 |
tttatctatacaaaaaggtatataactagttaggtaatcatgtgatttatata |
70 |
Q |
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| T |
11001104 |
tttatctatacaaaagggtatataactagtcaagtaatcatgtgatttatata |
11001052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 373 - 460
Target Start/End: Complemental strand, 10994408 - 10994319
Alignment:
| Q |
373 |
atttgtttgtatgattttgtttgaaaaacaaacccatcactaaag--nnnnnnnntaccaaaatgataaaccaattaattacaaagtttt |
460 |
Q |
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| T |
10994408 |
atttgattgtatgattttgtctgaaaaagaaacccaacactaaaggaaaaaaaaataccaaaatgataaatcaattaattgcaaagtttt |
10994319 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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