View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20099_low_13 (Length: 418)
Name: NF20099_low_13
Description: NF20099
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20099_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 411; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 1 - 411
Target Start/End: Complemental strand, 36313155 - 36312745
Alignment:
| Q |
1 |
tggcaaacaggttttaactgatgaagcaaatgtctctgatgctataaacacagctactgaagagcttgctggaactgccaaagggatttcaaacactcca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36313155 |
tggcaaacaggttttaactgatgaagcaaatgtctctgatgctataaacacagctactgaagagcttgctggaactgccaaagggatttcaaacactcca |
36313056 |
T |
|
| Q |
101 |
ctgactttgattgtgaagaagaatggcgttcctgaccttacaatggttgatcttccaggtataactcgtgttcctgttcatggtcaacctgataacattt |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36313055 |
ctgactttgattgtgaagaagaatggcgttcctgaccttacaatggttgatcttccaggtataactcgtgttcctgttcatggtcaacctgataacattt |
36312956 |
T |
|
| Q |
201 |
atgatcagattaaggatattatcatggactatataactcctgaagagagcattatcctgaatgttctttctgctactgttgattttagtacttgtgagtc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36312955 |
atgatcagattaaggatattatcatggactatataactcctgaagagagcattatcctgaatgttctttctgctactgttgattttagtacttgtgagtc |
36312856 |
T |
|
| Q |
301 |
tattaggatgtcacagatggttgataaaactggtttgaggacattagctgttgtaacaaaggctgataaatcacctgaaggtttgttggagaaagtaact |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36312855 |
tattaggatgtcacagatggttgataaaactggtttgaggacattagctgttgtaacaaaggctgataaatcacctgaaggtttgttggagaaagtaact |
36312756 |
T |
|
| Q |
401 |
gctgatgatgt |
411 |
Q |
| |
|
||||||||||| |
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| T |
36312755 |
gctgatgatgt |
36312745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 11 - 411
Target Start/End: Complemental strand, 36290662 - 36290262
Alignment:
| Q |
11 |
gttttaactgatgaagcaaatgtctctgatgctataaacacagctactgaagagcttgctggaactgccaaagggatttcaaacactccactgactttga |
110 |
Q |
| |
|
||||| ||||||||| | |||| |||||||| ||||||| ||||||||| || ||||||| |||||||||||||||| |||||||| |||| |||| |
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| T |
36290662 |
gttttcactgatgaaaaagatgtttctgatgcaataaacatagctactgaggaaattgctggttctgccaaagggatttccaacactcctttgacattga |
36290563 |
T |
|
| Q |
111 |
ttgtgaagaagaatggcgttcctgaccttacaatggttgatcttccaggtataactcgtgttcctgttcatggtcaacctgataacatttatgatcagat |
210 |
Q |
| |
|
|||| |||||||| || |||||||| ||||| |||||||||||||||||||| || ||||| ||||||||||||||||||||||| || ||||||||||| |
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|
| T |
36290562 |
ttgtcaagaagaacggtgttcctgatcttaccatggttgatcttccaggtatcacacgtgtacctgttcatggtcaacctgataatatctatgatcagat |
36290463 |
T |
|
| Q |
211 |
taaggatattatcatggactatataactcctgaagagagcattatcctgaatgttctttctgctactgttgattttagtacttgtgagtctattaggatg |
310 |
Q |
| |
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||| |||||||| ||||| ||||||||||||||||| || |||||| |||||| |||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
36290462 |
taaagatattattatggagtatataactcctgaagaaagtattatctcgaatgtcctttctgctactgttgattttacaacttgtgagtctattaggatg |
36290363 |
T |
|
| Q |
311 |
tcacagatggttgataaaactggtttgaggacattagctgttgtaacaaaggctgataaatcacctgaaggtttgttggagaaagtaactgctgatgatg |
410 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| | |||||||| ||||| || |||||||| |||||||| ||||||||||| || || |||||||||| |
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| T |
36290362 |
tcacaaatggttgataaaactggtttgaggacacttgctgttgtcacaaaagccgataaatctcctgaaggattgttggagaaggttaccgctgatgatg |
36290263 |
T |
|
| Q |
411 |
t |
411 |
Q |
| |
|
| |
|
|
| T |
36290262 |
t |
36290262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 242 - 411
Target Start/End: Complemental strand, 33579845 - 33579676
Alignment:
| Q |
242 |
gaagagagcattatcctgaatgttctttctgctactgttgattttagtacttgtgagtctattaggatgtcacagatggttgataaaactggtttgagga |
341 |
Q |
| |
|
||||| ||||||||| |||||||||||||||||||| ||||||| |||||||||||| | ||||||||| | | ||||||||||||||||||||| |
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| T |
33579845 |
gaagaaagcattatcttgaatgttctttctgctactattgatttctctacttgtgagtcattaaggatgtcagaaactgttgataaaactggtttgaggt |
33579746 |
T |
|
| Q |
342 |
cattagctgttgtaacaaaggctgataaatcacctgaaggtttgttggagaaagtaactgctgatgatgt |
411 |
Q |
| |
|
|| | |||| | |||||||| ||||||| | |||||| ||||| |||||||| |||||||||||||| |
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|
| T |
33579745 |
cacttgctgctacttcaaaggctcataaatctcttgaaggattgtttgagaaagttactgctgatgatgt |
33579676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 242 - 411
Target Start/End: Original strand, 15997153 - 15997322
Alignment:
| Q |
242 |
gaagagagcattatcctgaatgttctttctgctactgttgattttagtacttgtgagtctattaggatgtcacagatggttgataaaactggtttgagga |
341 |
Q |
| |
|
||||| ||||||||| |||||||||||||||||||| ||||||| |||||||||||| | ||||||||| | | ||||||||||||| ||||||| |
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| T |
15997153 |
gaagaaagcattatcttgaatgttctttctgctactattgatttctctacttgtgagtcattaaggatgtcagaaactgttgataaaactgatttgaggt |
15997252 |
T |
|
| Q |
342 |
cattagctgttgtaacaaaggctgataaatcacctgaaggtttgttggagaaagtaactgctgatgatgt |
411 |
Q |
| |
|
|| | |||| | |||||||| ||||||| | |||||| ||||| |||||||| |||||||||||||| |
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|
| T |
15997253 |
cacttgctgctacttcaaaggctcataaatctcttgaaggattgtttgagaaagttactgctgatgatgt |
15997322 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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