View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20099_low_17 (Length: 341)
Name: NF20099_low_17
Description: NF20099
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20099_low_17 |
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Alignment Details
Target: chr8 (Bit Score: 288; Significance: 1e-161; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 1 - 324
Target Start/End: Complemental strand, 39101181 - 39100863
Alignment:
| Q |
1 |
gaatggtgctcatagggtccaacaaaaaccacccatctttcttcttcactaaggcacctcaacattctttctctcaaaatagaagggacaactattccca |
100 |
Q |
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| T |
39101181 |
gaatggtgctcatagggtccaacaaaaaccacccatctttcttcttcgctaaggcacctcaacattctttctctcaaaatagaagggacaactattccca |
39101082 |
T |
|
| Q |
101 |
ttacttcttgaagcctcttgatggctgccgttgcacccgagccgcatagcatgagtgcatcgtcttccccaccacctaagcattttttaatgtacttggt |
200 |
Q |
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| T |
39101081 |
ttacttcttgaagcctcttgatggctgccgttgcgcccgagccgcatagcatgagtgcatcgtcttccccaccacctaagcattttttaatgtacttggt |
39100982 |
T |
|
| Q |
201 |
tacttcatgtaccatttttgttgtcctgtttccaacgtaactctcacaagtatgggtattacctgcatatagcatagtttcataaatacatccaaataca |
300 |
Q |
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| T |
39100981 |
tgcttcatgtaccatttttgttgtcctgtttccaacgtaactctcacaagtatgggtattacctacatatagcatagtttcataaatacatccaaa---- |
39100886 |
T |
|
| Q |
301 |
atacagctgtactgaattattaac |
324 |
Q |
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||||||||||||||||||||||| |
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| T |
39100885 |
-tacagctgtactgaattattaac |
39100863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 1 - 265
Target Start/End: Complemental strand, 39110290 - 39110026
Alignment:
| Q |
1 |
gaatggtgctcatagggtccaacaaaaaccacccatctttcttcttcactaaggcacctcaacattctttctctcaaaatagaagggacaactattccca |
100 |
Q |
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||||||||||||| ||||| ||||||||||||||||||||||||| ||||||| ||||||| ||||| |||||||||||||| || | ||| ||| |
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| T |
39110290 |
gaatggtgctcatgtggtcctacaaaaaccacccatctttcttctttgctaaggctattcaacatactttccctcaaaatagaaggcactgcaattacca |
39110191 |
T |
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| Q |
101 |
ttacttcttgaagcctcttgatggctgccgttgcacccgagccgcatagcatgagtgcatcgtcttccccaccacctaagcattttttaatgtacttggt |
200 |
Q |
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||||||||||||| || ||||||| ||| |||| || ||||| || | |||| |||||| ||||| || |||||||||||||| |||||||||| || |
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| T |
39110190 |
ttacttcttgaagtcttttgatggatgcagttgtgcctgagccacagaagatgattgcatcatcttctccgccacctaagcatttcttaatgtactcagt |
39110091 |
T |
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| Q |
201 |
tacttcatgtaccatttttgttgtcctgtttccaacgtaactctcacaagtatgggtattacctg |
265 |
Q |
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| ||||||||| |||||||||||| ||| |||| || ||||| || |||||||| ||||| |||| |
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| T |
39110090 |
tgcttcatgtagcatttttgttgttctgcttcccacataactgtcgcaagtatgagtattccctg |
39110026 |
T |
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