View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20099_low_20 (Length: 335)
Name: NF20099_low_20
Description: NF20099
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20099_low_20 |
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Alignment Details
Target: chr5 (Bit Score: 263; Significance: 1e-146; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 1 - 267
Target Start/End: Complemental strand, 15627058 - 15626792
Alignment:
| Q |
1 |
gatcgtaaattgaatcgaaattttgatgaaagtgaggtagtgcttgtgttgaaattaggattgttatgttcaaatgatgttccttttgttagacctagca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15627058 |
gatcgtaaattgaatcgaaattttgatgaaagtgaggtagtgcttgtgttgaaattaggattgttatgttcaaatgatgttccttttgttagacctagca |
15626959 |
T |
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| Q |
101 |
tgagacaagtgatgaggattttggatggagaagttgagttgcctgatgatttgagtaatccaggagttattgatccacaacagggttttgatgaattttt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
15626958 |
tgagacaagtgatgaggattttggatggagaagttgagttgcctgatgatttgagtaatccaggagttattgatccacaacaggggtttgatgaattttt |
15626859 |
T |
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| Q |
201 |
gcactctgcatattcctcatttgatatcatggattcaagctcttatcttgaaaatagatatacagat |
267 |
Q |
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| T |
15626858 |
gcactctgcatattcctcatttgatatcatggattcaagctcttatcttgaaaatagatatacagat |
15626792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 266 - 319
Target Start/End: Complemental strand, 15626814 - 15626761
Alignment:
| Q |
266 |
atcttgaaaatagatatacagatggtacttgttatatctcttttgagagttcac |
319 |
Q |
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| T |
15626814 |
atcttgaaaatagatatacagatggtacttgttatatctcttttgagagttcac |
15626761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 71; Significance: 4e-32; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 22934608 - 22934810
Alignment:
| Q |
1 |
gatcgtaaattgaatcgaaattttgatgaaagtgaggtagtgcttgtgttgaaattaggattgttatgttcaaatgatgttccttttgttagacctagca |
100 |
Q |
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|||| |||||||||| | |||| ||||||||||||| || | |||||||||||||| ||| | |||||||||||||||||| | |||| ||||||| |
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| T |
22934608 |
gatcctaaattgaatggtgatttcaatgaaagtgaggtgatgatggtgttgaaattagggttgatgtgttcaaatgatgttcctactattaggcctagca |
22934707 |
T |
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| Q |
101 |
tgagacaagtgatgaggattttggatggagaagttgagttgcctgatgatttgagtaatccaggagttattgatccacaacagggttttgatgaattttt |
200 |
Q |
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| |||||||| |||||||||||||||||||||||||||| || |||| |||| || ||| ||| ||||||| ||||| |||| |||||||| ||||| |
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| T |
22934708 |
taagacaagtagtgaggattttggatggagaagttgagttaccaaatgaaatgagaaagccaagaggtattgattcacaagaggggtttgatgagttttt |
22934807 |
T |
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| Q |
201 |
gca |
203 |
Q |
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||| |
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| T |
22934808 |
gca |
22934810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 1 - 197
Target Start/End: Complemental strand, 22920983 - 22920787
Alignment:
| Q |
1 |
gatcgtaaattgaatcgaaattttgatgaaagtgaggtagtgcttgtgttgaaattaggattgttatgttcaaatgatgttccttttgttagacctagca |
100 |
Q |
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|||| |||||||||| | |||||| ||||| ||||||| || | || ||||||||||| ||| ||||||||||||||||||| | | || ||||| | |
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| T |
22920983 |
gatcctaaattgaatggtgattttgttgaaactgaggtaatgatggttttgaaattaggtttgatatgttcaaatgatgttccaactataaggcctagta |
22920884 |
T |
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| Q |
101 |
tgagacaagtgatgaggattttggatggagaagttgagttgcctgatgatttgagtaatccaggagttattgatccacaacagggttttgatgaatt |
197 |
Q |
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|||||||||| |||||||||||||||||||||||||||| || |||| |||| || ||||| | ||||||| ||||| | || ||||||||||| |
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| T |
22920883 |
tgagacaagtagtgaggattttggatggagaagttgagttaccaaatgaaatgagaaaaccaggtggtattgattcacaagaaggatttgatgaatt |
22920787 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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