View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20099_low_21 (Length: 333)
Name: NF20099_low_21
Description: NF20099
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20099_low_21 |
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| [»] chr2 (6 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 288; Significance: 1e-161; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 2 - 333
Target Start/End: Complemental strand, 27725340 - 27725009
Alignment:
| Q |
2 |
tagaactcacatcccctttgtttttccacataaacattcagattcagaagattgatagatctatggctccaacaaaccaaaaggttagtaaccatgttcc |
101 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27725340 |
tagaactcacatcccctttgtttttccacataaacattcagattcagaagattgatagatctatggctccaacaaaccaaaaggttagtaaccatgttcc |
27725241 |
T |
|
| Q |
102 |
tgatgatatcgtcttctctattttttcaaaactacctttgaaatctgtgaataggtttacttgtttaggtaaatcttggtctacattatttgaaaaccct |
201 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| ||||||||||||||| |
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| T |
27725240 |
tgatgatatcgtcttctctattttttcaaaactacctttgaaatctgcgaataggtttacttgtttaggcaaatcttggtctactttatttgaaaaccct |
27725141 |
T |
|
| Q |
202 |
tatttcatcaacatgttttacattaatgtagttgccaaatatcattcactgtatcatgaagcatgtctccttctaaactattttgagagtactgagaatc |
301 |
Q |
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|||||||||||||||||||||| ||| | ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27725140 |
tatttcatcaacatgttttacaaaaatattgtttccaaatatcattcactgtatcatgaagcatgtctccttctaaactattttgagagtactgagaatc |
27725041 |
T |
|
| Q |
302 |
tatggaagttgtatttgcttagcggtgagaga |
333 |
Q |
| |
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||||||||||||||||||| |||||||||| |
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| T |
27725040 |
aatggaagttgtatttgctttccggtgagaga |
27725009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 62 - 321
Target Start/End: Complemental strand, 27736528 - 27736269
Alignment:
| Q |
62 |
ctatggctccaacaaaccaaaaggttagtaaccatgttcctgatgatatcgtcttctctattttttcaaaactacctttgaaatctgtgaataggtttac |
161 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27736528 |
ctatggctgcaacaaaccaaaaggttagtaaccatgttcctgatgatatcgtcttttctattttttcaaaactacctttgaaatctgtgaataggtttac |
27736429 |
T |
|
| Q |
162 |
ttgtttaggtaaatcttggtctacattatttgaaaacccttatttcatcaacatgttttacattaatgtagttgccaaatatcattcactgtatcatgaa |
261 |
Q |
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||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| | ||| ||||| |||||||||||||| ||||| |
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| T |
27736428 |
ttgtttaggcaaatcttggtctactttatttgaaaacccttatttcatcaacatgttttacaaaaatattgtttccaaacatcattcactgtatgatgaa |
27736329 |
T |
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| Q |
262 |
gcatgtctccttctaaactattttgagagtactgagaatctatggaagttgtatttgctt |
321 |
Q |
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|||||||||||||||||||||||||| ||||||| ||||| ||||||||||||||||||| |
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| T |
27736328 |
gcatgtctccttctaaactattttgatagtactgtgaatcaatggaagttgtatttgctt |
27736269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 62 - 280
Target Start/End: Complemental strand, 27717936 - 27717718
Alignment:
| Q |
62 |
ctatggctccaacaaaccaaaaggttagtaaccatgttcctgatgatatcgtcttctctattttttcaaaactacctttgaaatctgtgaataggtttac |
161 |
Q |
| |
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|||||||||||||||| |||||||||||| |||||||| || ||| ||||||||||||| ||||||||||||||| ||||||| |||||| ||||||| |
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| T |
27717936 |
ctatggctccaacaaatcaaaaggttagtcttcatgttcccgaagatgtcgtcttctctatattttcaaaactacctctgaaatccgtgaatcggtttac |
27717837 |
T |
|
| Q |
162 |
ttgtttaggtaaatcttggtctacattatttgaaaacccttatttcatcaacatgttttacattaatgtagttgccaaatatcattcactgtatcatgaa |
261 |
Q |
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||| || ||||||||| |||| |||||||||||| |||||||||| |||||||||| || || | ||| |||||||||||| |||| ||||| |
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| T |
27717836 |
atgtgtatccaaatcttggactactttatttgaaaactcttatttcatgaacatgttttccaaatatatggtttccaaatatcatttgtcgtatgatgaa |
27717737 |
T |
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| Q |
262 |
gcatgtctccttctaaact |
280 |
Q |
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||||||||||| ||||||| |
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| T |
27717736 |
gcatgtctcctcctaaact |
27717718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 80 - 279
Target Start/End: Complemental strand, 27596341 - 27596142
Alignment:
| Q |
80 |
aaaaggttagtaaccatgttcctgatgatatcgtcttctctattttttcaaaactacctttgaaatctgtgaataggtttacttgtttaggtaaatcttg |
179 |
Q |
| |
|
|||||||||||| | |||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| || ||| || |
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| T |
27596341 |
aaaaggttagtatctatgttcctgaagatatcgtcttctctattctttcaaaactacctttgaaatctgtgaaacggtttacttgtgtaaacaaacttta |
27596242 |
T |
|
| Q |
180 |
gtctacattatttgaaaacccttatttcatcaacatgttttacattaatgtagttgccaaatatcattcactgtatcatgaagcatgtctccttctaaac |
279 |
Q |
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|| ||||||||||| |||||||| | ||||||||||||| ||| | ||| |||||||| ||||| |||| ||||| ||||| |||| |||||| |
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| T |
27596241 |
cactcttttatttgaaaatccttattttgtgaacatgttttacaaaaatatggtttccaaatataattcattgtacgatgaaccatgtttcctcctaaac |
27596142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 80 - 277
Target Start/End: Complemental strand, 27590293 - 27590096
Alignment:
| Q |
80 |
aaaaggttagtaaccatgttcctgatgatatcgtcttctctattttttcaaaactacctttgaaatctgtgaataggtttacttgtttaggtaaatcttg |
179 |
Q |
| |
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||||||||| || | |||||| ||| ||||||||||||||||| |||| ||||||||||| ||||||||||| ||||||||||| || ||| ||| |
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| T |
27590293 |
aaaaggttaatatctatgttcttgaatatatcgtcttctctattctttcgaaactacctttaaaatctgtgaagcggtttacttgtataaacaaacattg |
27590194 |
T |
|
| Q |
180 |
gtctacattatttgaaaacccttatttcatcaacatgttttacattaatgtagttgccaaatatcattcactgtatcatgaagcatgtctccttctaa |
277 |
Q |
| |
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| || |||||||||||||||||||| | ||||||||||||| |||| | ||| |||||||| ||||| |||| ||||| ||||| |||| |||| |
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| T |
27590193 |
gactcttttatttgaaaacccttattttgtgaacatgttttacaataatatggtttccaaatataattcattgtacgatgaaccatgtttcctgctaa |
27590096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 43 - 190
Target Start/End: Complemental strand, 27084953 - 27084809
Alignment:
| Q |
43 |
attcagaagattgatagatctatggctccaacaaaccaaaaggttagtaaccatgttcctgatgatatcgtcttctctattttttcaaaactacctttga |
142 |
Q |
| |
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||||||||| |||| | |||||| |||||||||| | |||||||||| |||||||| || ||||| || |||||||||||| || ||||||||||| |
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| T |
27084953 |
attcagaagtttgagatatctattcctccaacaaatcgaaaggttagtcttcatgttcccgaagatattgt-ttctctattttt--aagactacctttga |
27084857 |
T |
|
| Q |
143 |
aatctgtgaataggtttacttgtttaggtaaatcttggtctacattat |
190 |
Q |
| |
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|||| |||||||||||||| |||||| | ||||||||| |||| |||| |
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| T |
27084856 |
aatccgtgaataggtttacatgtttatgcaaatcttggactactttat |
27084809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 129; Significance: 1e-66; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 62 - 282
Target Start/End: Complemental strand, 14682911 - 14682691
Alignment:
| Q |
62 |
ctatggctccaacaaaccaaaaggttagtaaccatgttcctgatgatatcgtcttctctattttttcaaaactacctttgaaatctgtgaataggtttac |
161 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |||||| ||||| ||||||| |
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| T |
14682911 |
ctatggctccaacaaaccaaaaggttagtaaccatgttcctgaagatatcgtcttttctattttttcaaaactacctttaaaatctttgaatcggtttac |
14682812 |
T |
|
| Q |
162 |
ttgtttaggtaaatcttggtctacattatttgaaaacccttatttcatcaacatgttttacattaatgtagttgccaaatatcattcactgtatcatgaa |
261 |
Q |
| |
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||||||||| || |||||| || |||||||||||||||||||| || ||||||||||||| ||| | ||| ||||||||||||| ||||| | ||| |
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| T |
14682811 |
ttgtttaggcaagtcttggactcttttatttgaaaacccttattttatgaacatgttttacaaaaatattgttttcaaatatcattcattgtatgacgaa |
14682712 |
T |
|
| Q |
262 |
gcatgtctccttctaaactat |
282 |
Q |
| |
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||| ||||||||||||||||| |
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| T |
14682711 |
gcaagtctccttctaaactat |
14682691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 64; Significance: 6e-28; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 44 - 279
Target Start/End: Complemental strand, 19226384 - 19226150
Alignment:
| Q |
44 |
ttcagaagattgatagatctatggctccaacaaaccaaaaggttagtaaccatgttcctgatgatatcgtcttctctattttttcaaaactacctttgaa |
143 |
Q |
| |
|
|||||||| |||| | ||||||||||||||| || |||||||||||| | ||||||| ||||| ||| ||||| ||||| ||||||||||||||||| |
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| T |
19226384 |
ttcagaagtttgagaaatctatggctccaacgaatgaaaaggttagtatctatgttccagatgacatcacgttctc-attttgtcaaaactacctttgaa |
19226286 |
T |
|
| Q |
144 |
atctgtgaataggtttacttgtttaggtaaatcttggtctacattatttgaaaacccttatttcatcaacatgttttacattaatgtagttgccaaatat |
243 |
Q |
| |
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|||||| ||| | ||||||||| || | ||||| ||| || || ||||||||| |||||||||| ||||||||||||| | | | || |||||||| |
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| T |
19226285 |
atctgtaaatcgatttacttgtgtatgcaaatcgtggactcttttgtttgaaaactcttatttcatgaacatgttttacaaaactatgttttccaaatat |
19226186 |
T |
|
| Q |
244 |
cattcactgtatcatgaagcatgtctccttctaaac |
279 |
Q |
| |
|
|||||| || | |||||||| | ||||||| ||||| |
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| T |
19226185 |
cattcattgaaccatgaagcttctctccttgtaaac |
19226150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 43 - 219
Target Start/End: Original strand, 19220618 - 19220794
Alignment:
| Q |
43 |
attcagaagattgatagatctatggctccaacaaaccaaaaggttagtaaccatgttcctgatgatatcgtcttctctattttttcaaaactacctttga |
142 |
Q |
| |
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||||||||| |||| | ||||||||||||||| || ||||||| |||| | ||||||| ||||| ||| ||||| ||||| |||||||||||||||| |
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| T |
19220618 |
attcagaagtttgagaaatctatggctccaacgaatgaaaaggtcagtatctatgttccagatgacatcacgttctccattttgtcaaaactacctttga |
19220717 |
T |
|
| Q |
143 |
aatctgtgaataggtttacttgtttaggtaaatcttggtctacattatttgaaaacccttatttcatcaacatgttt |
219 |
Q |
| |
|
||||||| ||| ||||||||||| || | ||||| ||| || || ||||||||| |||||||||| ||||||||| |
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|
| T |
19220718 |
aatctgtaaatcggtttacttgtgtatgcaaatcgtggactcttttgtttgaaaactcttatttcatgaacatgttt |
19220794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 83 - 152
Target Start/End: Complemental strand, 39725537 - 39725468
Alignment:
| Q |
83 |
aggttagtaaccatgttcctgatgatatcgtcttctctattttttcaaaactacctttgaaatctgtgaa |
152 |
Q |
| |
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||||||| || ||||| ||||||||||| |||||||||||| | |||||||| ||||| |||||| |||| |
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| T |
39725537 |
aggttagcaatcatgtacctgatgatattgtcttctctattctgtcaaaacttcctttcaaatctttgaa |
39725468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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