View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20099_low_22 (Length: 330)

Name: NF20099_low_22
Description: NF20099
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20099_low_22
NF20099_low_22
[»] chr3 (3 HSPs)
chr3 (111-311)||(42230633-42230830)
chr3 (50-112)||(42230502-42230564)
chr3 (1-57)||(42229614-42229670)


Alignment Details
Target: chr3 (Bit Score: 162; Significance: 2e-86; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 111 - 311
Target Start/End: Original strand, 42230633 - 42230830
Alignment:
Q  111 ttcaaaatataacaatatacatatatgcatattcgagacttcttgtaatcatgtccctattttgaatatgaggctgatgatcattgatgatttctataaa 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||    
T  42230633 ttcaaaatataacaatatacatatatgcatattcgagacttcttgtaatcatgtccctattttgaatatgaggc---tgatcattgatgatttctataaa 42230729  T
Q  211 tgaatccacgttttatatgatactctctttggtttannnnnnnctcttcttgtttcattaaatcattgacttaattttatatatggtgcagggagaaaac 310  Q
    |||||||| |||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42230730 tgaatccatgttttatatgatactctctttggtttattttttcctcttcttgtttcattaaatcattgacttaattttatatatggtgcagggagaaaac 42230829  T

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Target: chr3; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 50 - 112
Target Start/End: Original strand, 42230502 - 42230564
Alignment:
Q  50 attttaaccctatttttctactaattaataaagataagtgggatatgtggttgttggattttt 112  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42230502 attttaaccatatttttctactaattaataaagataagtgggatatgtggttgttggattttt 42230564  T

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Target: chr3; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 42229614 - 42229670
Alignment:
Q  1 attctaaaataagtgactaatttgattgtgtgtactttttacctaatctattttaac 57  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  42229614 attctaaaataagtgactaatttgattgtgtgtactttttacctaacctattttaac 42229670  T

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