View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20099_low_24 (Length: 321)
Name: NF20099_low_24
Description: NF20099
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20099_low_24 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 305; Significance: 1e-172; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 305; E-Value: 1e-172
Query Start/End: Original strand, 1 - 321
Target Start/End: Complemental strand, 15627535 - 15627215
Alignment:
| Q |
1 |
ctacttgtgtatgacttcatggccaatggaagcttagataagtacttgtttggaaacacagaacttgtgttaagttgggaacaaaggttcaagataataa |
100 |
Q |
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| T |
15627535 |
ctacttgtgtatgacttcatggctaatggaagcttagataagtacttgtttgaaaacacagaaattgtgttaagttgggaacaaaggttcaagataataa |
15627436 |
T |
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| Q |
101 |
agggtgtcgcttcaggccttttgtatctacatgaaggctatgagcaagttgtaatacacagagatgttaaggctagcaatgttcttttagactttgaact |
200 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15627435 |
agggtgttgcttcaggccttttgtatctacatgaaggctatgagcaagttgtaatacacagagatgttaaggctagcaatgttcttttagactttgaact |
15627336 |
T |
|
| Q |
201 |
caacggaagattaggtgattttggtttggcaaggttatatgaacacggtgctaatccagggaccacaagagtggtgggaaccttaggctatttggcaccg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15627335 |
caacggaagattaggtgattttggtttggcaaggttatatgaacacggtgctaatccagggaccacaagagtggtgggaaccttaggctatttggcaccg |
15627236 |
T |
|
| Q |
301 |
gaattacctagaacaggaaga |
321 |
Q |
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||||||||||||||||||||| |
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| T |
15627235 |
gaattacctagaacaggaaga |
15627215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 179; Significance: 1e-96; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 4 - 318
Target Start/End: Complemental strand, 22921457 - 22921143
Alignment:
| Q |
4 |
cttgtgtatgacttcatggccaatggaagcttagataagtacttgtttggaaacacagaacttgtgttaagttgggaacaaaggttcaagataataaagg |
103 |
Q |
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||||||||||| | |||||| ||||||||||| || ||||||||||||| | | ||||| |||| ||||||||||||| ||||| ||||||||||||| |
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| T |
22921457 |
cttgtgtatgattacatggcgaatggaagcttggacaagtacttgtttgaagattcagaatatgtgctaagttgggaacagaggtttaagataataaagg |
22921358 |
T |
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| Q |
104 |
gtgtcgcttcaggccttttgtatctacatgaaggctatgagcaagttgtaatacacagagatgttaaggctagcaatgttcttttagactttgaactcaa |
203 |
Q |
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|||| |||||||| |||||||||||||||||||||||||||||||| ||||| || ||||||||||| ||||||||||| || || || ||||||||||| |
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| T |
22921357 |
gtgttgcttcaggtcttttgtatctacatgaaggctatgagcaagtggtaatccatagagatgttaaagctagcaatgtgctgttggattttgaactcaa |
22921258 |
T |
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| Q |
204 |
cggaagattaggtgattttggtttggcaaggttatatgaacacggtgctaatccagggaccacaagagtggtgggaaccttaggctatttggcaccggaa |
303 |
Q |
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| T |
22921257 |
tggaagattaggcgatttcggattggcaaggttgtatgaacatggtgctaatccaggcacaacaagagtggtgggaacattaggctatttggcaccggag |
22921158 |
T |
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| Q |
304 |
ttacctagaacagga |
318 |
Q |
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| T |
22921157 |
ttacctagaacagga |
22921143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 319
Target Start/End: Original strand, 22934131 - 22934449
Alignment:
| Q |
1 |
ctacttgtgtatgacttcatggccaatggaagcttagataagtacttgtttggaaacacagaacttgtgttaagttgggaacaaaggttcaagataataa |
100 |
Q |
| |
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||||||||||| || |||||| | |||||||||||||| || |||||||||| | | ||||| ||||| ||||||||||||||||||| |||||||||| |
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| T |
22934131 |
ctacttgtgtacgatttcatgtcaaatggaagcttagacaaatacttgtttgaagattcagaaattgtgctaagttgggaacaaaggtttaagataataa |
22934230 |
T |
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| Q |
101 |
agggtgtcgcttcaggccttttgtatctacatgaaggctatgagcaagttgtaatacacagagatgttaaggctagcaatgttcttttagactttgaact |
200 |
Q |
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||||||| ||| |||| ||||||| |||||||||||| ||||||||||| |||||||| ||||||||||||||||| |||||||| ||||| | ||||| |
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| T |
22934231 |
agggtgttgctgcaggtcttttgtttctacatgaaggttatgagcaagtggtaatacatagagatgttaaggctagtaatgttctcttagattgcgaact |
22934330 |
T |
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| Q |
201 |
caacggaagattaggtgattttggtttggcaaggttatatgaacacggtgctaatccagggaccacaagagtggtgggaaccttaggctatttggcaccg |
300 |
Q |
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||| |||||||||||||||||||| ||||||||||| |||||||| ||||||||||| || || ||||||||||||||||| ||||||||||||||||| |
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| T |
22934331 |
caatggaagattaggtgattttggattggcaaggttgtatgaacatggtgctaatcccggcacgacaagagtggtgggaacattaggctatttggcacca |
22934430 |
T |
|
| Q |
301 |
gaattacctagaacaggaa |
319 |
Q |
| |
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||||| ||||||||||||| |
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| T |
22934431 |
gaattgcctagaacaggaa |
22934449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 169 - 292
Target Start/End: Complemental strand, 7285475 - 7285352
Alignment:
| Q |
169 |
aaggctagcaatgttcttttagactttgaactcaacggaagattaggtgattttggtttggcaaggttatatgaacacggtgctaatccagggaccacaa |
268 |
Q |
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|||||||||||||| |||||||| ||||||||||| |||||||||| ||||||| ||| ||||||||| |||||||| ||||||||||||| ||||||| |
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| T |
7285475 |
aaggctagcaatgtgcttttagattttgaactcaatggaagattagttgattttagttgggcaaggttgtatgaacatggtgctaatccagcaaccacaa |
7285376 |
T |
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| Q |
269 |
gagtggtgggaaccttaggctatt |
292 |
Q |
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||||||||||||||||||||||| |
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| T |
7285375 |
cagtggtgggaaccttaggctatt |
7285352 |
T |
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