View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20099_low_25 (Length: 311)
Name: NF20099_low_25
Description: NF20099
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20099_low_25 |
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Alignment Details
Target: chr2 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 14 - 300
Target Start/End: Original strand, 29648743 - 29649029
Alignment:
| Q |
14 |
cattaattactacaagtttttgcttttggggtaaaagaaacttgattctttccaacatcaaagaggaaagtatgatcagcttggttgatgactcccaata |
113 |
Q |
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| T |
29648743 |
cattacttactacaagtttttgcttttggggtaaaagaaacttgattctttccaacatcaaagaggaaagtatgatcagcttggttgatgactcccaata |
29648842 |
T |
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| Q |
114 |
tatttccaaaatcattgtgccctagaacagccaagcagaatactttattcctcccgtctcctgcagacagaaatcctgactcaggagccaccacaaaatc |
213 |
Q |
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| T |
29648843 |
tatttccaaaatcattgtgccctagaacagccaagcagaatactttattcctcccgtctcctgcagacagaaatcctgactcaggagccaccacaaaatc |
29648942 |
T |
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| Q |
214 |
agcacctccatcaaaatggtacgttatcgtaggcttcacgatgttgggtggaggattaagataacaaagatcaagagacagtttctt |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29648943 |
agcacctccatcaaaatggtacgttatcgtaggcttcacaatgttgggtggaggattaagataacaaagatcaagagacagtttctt |
29649029 |
T |
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