View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20099_low_26 (Length: 303)
Name: NF20099_low_26
Description: NF20099
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20099_low_26 |
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Alignment Details
Target: chr5 (Bit Score: 243; Significance: 1e-135; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 1 - 287
Target Start/End: Original strand, 18144399 - 18144685
Alignment:
| Q |
1 |
tatcagttacatacctatctaggcaagaacccaaaattggaaatggcaatctcaaaggcgtttaacctttctccacgaccaaagccattgcggtcatacg |
100 |
Q |
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| T |
18144399 |
tatcagttacatacctatctaggcaagaacccaaaattggaaatggcaatctcaaaggcgtttaacctttctccacgaccaaagccattgcgatcatagg |
18144498 |
T |
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| Q |
101 |
atgatatttcatttatgtttagatcaacacatgctttcacaagtgcctccccaacacgttgagcagcttcctaaaacaatatttcacccaaacataagaa |
200 |
Q |
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| T |
18144499 |
atgatatttcatttatgtttagatcaacacaggctttcacaagtgcctccccaacacgttgagcagcttcctaaaacaatatttcacccaaacataagga |
18144598 |
T |
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| Q |
201 |
aaaatccaaagctaaagtctaatgtaacaaaggttgttatcctagtctcatacaacatttgactcaataatgagtcggactacttac |
287 |
Q |
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| T |
18144599 |
aaaatccaaagctaaagtctaatgtaacaaaagttgttttccaagtctcatacaatatttgtctcaaaaatgagttggactacttac |
18144685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 18142864 - 18142955
Alignment:
| Q |
1 |
tatcagttacatacctatctaggcaagaacccaaaattggaaatggcaatctcaaaggcgtttaacctttctccacgaccaaagccattgcg |
92 |
Q |
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| T |
18142864 |
tatcagttgcttacctatctaggcaagaaatcataattggaaatggcaatctaaaaggcgtttaaactttctccgcgaccaaagtcattgcg |
18142955 |
T |
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