View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20099_low_27 (Length: 302)

Name: NF20099_low_27
Description: NF20099
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20099_low_27
NF20099_low_27
[»] chr2 (7 HSPs)
chr2 (5-289)||(27724477-27724761)
chr2 (64-289)||(27735719-27735950)
chr2 (85-134)||(7435557-7435606)
chr2 (5-139)||(27717303-27717438)
chr2 (85-134)||(7524386-7524435)
chr2 (85-141)||(16920702-16920758)
chr2 (79-165)||(27595668-27595754)
[»] chr8 (1 HSPs)
chr8 (83-289)||(14682135-14682341)
[»] chr1 (3 HSPs)
chr1 (82-139)||(19225744-19225801)
chr1 (67-139)||(19221209-19221281)
chr1 (85-126)||(344828-344869)
[»] chr5 (5 HSPs)
chr5 (84-143)||(37512600-37512659)
chr5 (84-141)||(32642642-32642699)
chr5 (91-140)||(42782935-42782984)
chr5 (91-140)||(41227659-41227708)
chr5 (84-140)||(42565277-42565333)
[»] chr4 (2 HSPs)
chr4 (84-126)||(4877550-4877592)
chr4 (85-150)||(48742276-48742341)
[»] chr7 (1 HSPs)
chr7 (85-140)||(42446026-42446081)
[»] chr6 (2 HSPs)
chr6 (85-140)||(32745195-32745250)
chr6 (85-142)||(32961060-32961117)
[»] scaffold0054 (1 HSPs)
scaffold0054 (85-141)||(33777-33833)


Alignment Details
Target: chr2 (Bit Score: 269; Significance: 1e-150; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 5 - 289
Target Start/End: Complemental strand, 27724761 - 27724477
Alignment:
Q  5 atgactataaggtcattcaatatgttgtttatattggaggttgtgaagatgagtggcaagttgcaccgcccggtccctattgggatatatatagtctaag 104  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27724761 atgactacaaggtcattcaatatgttgtttatattggaggttgtgaagatgagtggcaagttgcaccgcccggtccctattgggatatatatagtctaag 27724662  T
Q  105 aagtaactcttggaagaaactttatgttgatatgccacaacgttatttgacttcggaaggttctatggtgtacttaaatggggtttgtcattggtgggga 204  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  27724661 aagtaactcttggaaaaaactttatgttgatatgccacaacgttatttgacttcggaaggttctatggtgtacttaaatggggtttgccattggtgggga 27724562  T
Q  205 aaaacatatcgtcaaccaagtgaaacatttgtggtgtcttttaacctggccactgaggtgcccgttaccactctttttccctttg 289  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  27724561 aaaacatatcgtcaaccaagtgaaacatttgtggtgtcttttaacctggccactgaggtgcccgttactactctttttccctttg 27724477  T

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Target: chr2; HSP #2
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 64 - 289
Target Start/End: Complemental strand, 27735950 - 27735719
Alignment:
Q  64 gttgcaccgcccggtccctattgggatatatatagtctaagaagtaactcttggaagaaactttatgttgatatgccacaacgttatttgacttcggaag 163  Q
    |||||||| ||||| ||||||||||| ||||||||||||   ||||||  ||||||||||||||||||||||||||  ||||||||||||||||||||||    
T  27735950 gttgcaccacccggcccctattgggaaatatatagtctacagagtaaccgttggaagaaactttatgttgatatgcggcaacgttatttgacttcggaag 27735851  T
Q  164 gttctatggtgtacttaaatggggtttgtcattggtggggaaaaacatatc------gtcaaccaagtgaaacatttgtggtgtcttttaacctggccac 257  Q
    ||||||||||||| |||||||||||||| |||||||||||||| |||||||      |   ||||||||||||||||||||||||||||||||||||||     
T  27735850 gttctatggtgtatttaaatggggtttgccattggtggggaaacacatatctaatgggaataccaagtgaaacatttgtggtgtcttttaacctggccaa 27735751  T
Q  258 tgaggtgcccgttaccactctttttccctttg 289  Q
    ||||||||| ||||||||||| ||||||||||    
T  27735750 tgaggtgcctgttaccactctctttccctttg 27735719  T

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Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 85 - 134
Target Start/End: Complemental strand, 7435606 - 7435557
Alignment:
Q  85 tgggatatatatagtctaagaagtaactcttggaagaaactttatgttga 134  Q
    ||||| ||||||||||||||||| |||||||||||||||||| |||||||    
T  7435606 tgggagatatatagtctaagaagcaactcttggaagaaacttgatgttga 7435557  T

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Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 5 - 139
Target Start/End: Complemental strand, 27717438 - 27717303
Alignment:
Q  5 atgactataaggtcattcaatatgttgtttatattggaggttgtgaagatgagtggcaagttgcaccgcccggtccctattgggatatatatagtctaag 104  Q
    ||||||||||  ||||||||||||| | |||||  ||| ||| |  |||| | || ||||  ||| |||| || ||||||||| |||||||||||||||     
T  27717438 atgactataaaatcattcaatatgtagattataccggatgttttatagattattgtcaagaagcatcgcctggcccctattggtatatatatagtctaaa 27717339  T
Q  105 aagtaact-cttggaagaaactttatgttgatatgc 139  Q
    ||  || | |||||||||||||||||||||||||||    
T  27717338 aaaaaaattcttggaagaaactttatgttgatatgc 27717303  T

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Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 85 - 134
Target Start/End: Complemental strand, 7524435 - 7524386
Alignment:
Q  85 tgggatatatatagtctaagaagtaactcttggaagaaactttatgttga 134  Q
    ||||| |||||||| |||||||| |||||||||||||||||| |||||||    
T  7524435 tgggaaatatatagcctaagaagcaactcttggaagaaacttgatgttga 7524386  T

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Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 85 - 141
Target Start/End: Original strand, 16920702 - 16920758
Alignment:
Q  85 tgggatatatatagtctaagaagtaactcttggaagaaactttatgttgatatgcca 141  Q
    ||||| |||||||||||||||||||| ||||||| ||||||| || |||| ||||||    
T  16920702 tgggagatatatagtctaagaagtaattcttggaggaaacttgatattgaaatgcca 16920758  T

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Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 79 - 165
Target Start/End: Complemental strand, 27595754 - 27595668
Alignment:
Q  79 ccctattgggatatatatagtctaagaagtaactcttggaagaaactttatgttgatatgccacaacgttatttgacttcggaaggt 165  Q
    ||||||||||| ||||||||| ||   ||||||| |||| ||| ||||||||||||||||| ||| |||| || || ||||| ||||    
T  27595754 ccctattgggaaatatatagtttagagagtaacttttgggagacactttatgttgatatgcgacatcgtttttggagttcggtaggt 27595668  T

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Target: chr8 (Bit Score: 151; Significance: 6e-80; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 83 - 289
Target Start/End: Complemental strand, 14682341 - 14682135
Alignment:
Q  83 attgggatatatatagtctaagaagtaactcttggaagaaactttatgttgatatgccacaacgttatttgacttcggaaggttctatggtgtacttaaa 182  Q
    ||||||| |||||||||||| ||||||||  ||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  14682341 attgggacatatatagtctacgaagtaaccattggaagaaactttacgttgatatgcgacaacgttatttgacttcggaaggttctatggtgtacttaaa 14682242  T
Q  183 tggggtttgtcattggtggggaaaaacatatcgtcaaccaagtgaaacatttgtggtgtcttttaacctggccactgaggtgcccgttaccactcttttt 282  Q
    ||||||||| |||||||||||||||| |||||||||||||| |||||||||||||||||||||| ||||||||| |||||| || ||||||||||| |||    
T  14682241 tggggtttgccattggtggggaaaaatatatcgtcaaccaattgaaacatttgtggtgtcttttgacctggccaatgaggttcctgttaccactctcttt 14682142  T
Q  283 ccctttg 289  Q
    |||||||    
T  14682141 ccctttg 14682135  T

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Target: chr1 (Bit Score: 46; Significance: 3e-17; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 82 - 139
Target Start/End: Complemental strand, 19225801 - 19225744
Alignment:
Q  82 tattgggatatatatagtctaagaagtaactcttggaagaaactttatgttgatatgc 139  Q
    |||||||| ||||||||||||| ||||||||||||||| |||||||||||||||||||    
T  19225801 tattgggacatatatagtctaaaaagtaactcttggaaaaaactttatgttgatatgc 19225744  T

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Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 67 - 139
Target Start/End: Original strand, 19221209 - 19221281
Alignment:
Q  67 gcaccgcccggtccctattgggatatatatagtctaagaagtaactcttggaagaaactttatgttgatatgc 139  Q
    ||||||||||| || |||||||| ||||||||||||||  ||||||||||||| |||||| ||||||||||||    
T  19221209 gcaccgcccggcccttattgggacatatatagtctaaggcgtaactcttggaaaaaacttcatgttgatatgc 19221281  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 85 - 126
Target Start/End: Original strand, 344828 - 344869
Alignment:
Q  85 tgggatatatatagtctaagaagtaactcttggaagaaactt 126  Q
    ||||| ||||| ||||||| ||||||||||||||||||||||    
T  344828 tgggagatatacagtctaaaaagtaactcttggaagaaactt 344869  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 84 - 143
Target Start/End: Original strand, 37512600 - 37512659
Alignment:
Q  84 ttgggatatatatagtctaagaagtaactcttggaagaaactttatgttgatatgccaca 143  Q
    ||||||||||||||| |||||||| ||||||||||  |||||| ||||| ||||||||||    
T  37512600 ttgggatatatatagcctaagaagcaactcttggagaaaacttgatgttaatatgccaca 37512659  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 84 - 141
Target Start/End: Original strand, 32642642 - 32642699
Alignment:
Q  84 ttgggatatatatagtctaagaagtaactcttggaagaaactttatgttgatatgcca 141  Q
    |||||| ||||||||| ||||||||||||||||||  |||||| |||||| |||||||    
T  32642642 ttgggagatatatagtttaagaagtaactcttggagaaaacttgatgttgttatgcca 32642699  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 91 - 140
Target Start/End: Original strand, 42782935 - 42782984
Alignment:
Q  91 atatatagtctaagaagtaactcttggaagaaactttatgttgatatgcc 140  Q
    ||||| |||||||||||||||||||||| ||||||| |||||| ||||||    
T  42782935 atatacagtctaagaagtaactcttggaggaaacttgatgttgttatgcc 42782984  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 91 - 140
Target Start/End: Original strand, 41227659 - 41227708
Alignment:
Q  91 atatatagtctaagaagtaactcttggaagaaactttatgttgatatgcc 140  Q
    ||||| ||||||||||||||| |||||| ||||||| |||||| ||||||    
T  41227659 atatacagtctaagaagtaacccttggaggaaacttgatgttgttatgcc 41227708  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 84 - 140
Target Start/End: Complemental strand, 42565333 - 42565277
Alignment:
Q  84 ttgggatatatatagtctaagaagtaactcttggaagaaactttatgttgatatgcc 140  Q
    |||||| || ||||| |||||||| ||||||||||| |||||| ||| |||||||||    
T  42565333 ttgggagatttatagcctaagaagcaactcttggaataaacttgatgctgatatgcc 42565277  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 84 - 126
Target Start/End: Original strand, 4877550 - 4877592
Alignment:
Q  84 ttgggatatatatagtctaagaagtaactcttggaagaaactt 126  Q
    |||||| || |||||||||||||||||||||||||||||||||    
T  4877550 ttgggagatttatagtctaagaagtaactcttggaagaaactt 4877592  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 85 - 150
Target Start/End: Complemental strand, 48742341 - 48742276
Alignment:
Q  85 tgggatatatatagtctaagaagtaactcttggaagaaactttatgttgatatgccacaacgttat 150  Q
    ||||| ||||| |||||||||||||||||||||| |||| || || | |||||||| ||| |||||    
T  48742341 tgggagatatacagtctaagaagtaactcttggaggaaaattgatctggatatgcctcaatgttat 48742276  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 85 - 140
Target Start/End: Original strand, 42446026 - 42446081
Alignment:
Q  85 tgggatatatatagtctaagaagtaactcttggaagaaactttatgttgatatgcc 140  Q
    ||||| ||||||||||||||||||||| | |||| ||||||| ||||||| |||||    
T  42446026 tgggagatatatagtctaagaagtaacccgtggaggaaacttgatgttgacatgcc 42446081  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 85 - 140
Target Start/End: Complemental strand, 32745250 - 32745195
Alignment:
Q  85 tgggatatatatagtctaagaagtaactcttggaagaaactttatgttgatatgcc 140  Q
    ||||| |||||||| |||||||||||||| |||| ||||||| ||||||| |||||    
T  32745250 tgggagatatatagcctaagaagtaactcctggaggaaacttgatgttgacatgcc 32745195  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 85 - 142
Target Start/End: Complemental strand, 32961117 - 32961060
Alignment:
Q  85 tgggatatatatagtctaagaagtaactcttggaagaaactttatgttgatatgccac 142  Q
    ||||| ||||||||  ||||||||||||| |||| ||||||| ||||||| |||||||    
T  32961117 tgggagatatatagcgtaagaagtaactcgtggaggaaacttgatgttgacatgccac 32961060  T

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Target: scaffold0054 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 85 - 141
Target Start/End: Complemental strand, 33833 - 33777
Alignment:
Q  85 tgggatatatatagtctaagaagtaactcttggaagaaactttatgttgatatgcca 141  Q
    ||||| |||||||| |||||||||||||| |||| ||||||| || |||| ||||||    
T  33833 tgggagatatatagcctaagaagtaactcgtggaggaaacttgatattgacatgcca 33777  T

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