View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20099_low_28 (Length: 295)
Name: NF20099_low_28
Description: NF20099
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20099_low_28 |
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Alignment Details
Target: chr7 (Bit Score: 272; Significance: 1e-152; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 15 - 286
Target Start/End: Complemental strand, 14812852 - 14812581
Alignment:
| Q |
15 |
aggtgaaaagtttgtaaaagatccaaaaaggttaaaggatcctatgatttttgttcaagaacttttggacatgaaagataaatatgatagtatattaaac |
114 |
Q |
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| T |
14812852 |
aggtgaaaagtttgtaaaagatccaaaaaggttaaaggatcctatgatttttgttcaagaacttttggacatgaaagataaatatgatagtatattaaac |
14812753 |
T |
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| Q |
115 |
ttggcatttaatcatgatgaagaattccatggagtgctggactcatcatttgagtacattattaacttgaatcacaatttgccagagtttctttcgtcgt |
214 |
Q |
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| T |
14812752 |
ttggcatttaatcatgatgaagaattccatggagtgctggactcatcatttgagtacattattaacttgaatcacaatttgccagagtttctttcgtcgt |
14812653 |
T |
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| Q |
215 |
tcttggatgtcaaattaaggaaaggtttcgaaggaaatagtgaggaaattattcttgacaaggtgatgatgt |
286 |
Q |
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| T |
14812652 |
tcttggatgtcaaattaaggaaaggtttcgaaggaaatagtgaggaaattattcttgacaaggtgatgatgt |
14812581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 15 - 286
Target Start/End: Complemental strand, 15259847 - 15259576
Alignment:
| Q |
15 |
aggtgaaaagtttgtaaaagatccaaaaaggttaaaggatcctatgatttttgttcaagaacttttggacatgaaagataaatatgatagtatattaaac |
114 |
Q |
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| T |
15259847 |
aggtgaaaagtttgtaaaagatccaaaaaggttaaaggatcctatgatttttgttcaagaacttttggacatgaaagataaatatgatagtatattaaac |
15259748 |
T |
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| Q |
115 |
ttggcatttaatcatgatgaagaattccatggagtgctggactcatcatttgagtacattattaacttgaatcacaatttgccagagtttctttcgtcgt |
214 |
Q |
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| T |
15259747 |
ttggcatttaatcatgatgaagaattccatggagtgctggactcatcatttgagtacattattaacttgaatcacaatttgccagagtttctttcgtcgt |
15259648 |
T |
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| Q |
215 |
tcttggatgtcaaattaaggaaaggtttcgaaggaaatagtgaggaaattattcttgacaaggtgatgatgt |
286 |
Q |
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| T |
15259647 |
tcttggatgtcaaattaaggaaaggtttcgaaggaaatagtgaggaaattattcttgacaaggtgatgatgt |
15259576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 15 - 286
Target Start/End: Original strand, 17521328 - 17521599
Alignment:
| Q |
15 |
aggtgaaaagtttgtaaaagatccaaaaaggttaaaggatcctatgatttttgttcaagaacttttggacatgaaagataaatatgatagtatattaaac |
114 |
Q |
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| T |
17521328 |
aggtgaaaagtttgtaaaagatccaaaaaggttaaaggatcctatgatttttgttcaagaacttttggacatgaaagataaatatgatagtatattaaac |
17521427 |
T |
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| Q |
115 |
ttggcatttaatcatgatgaagaattccatggagtgctggactcatcatttgagtacattattaacttgaatcacaatttgccagagtttctttcgtcgt |
214 |
Q |
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| T |
17521428 |
ttggcatttaatcatgatgaagaattccatggagtgctggactcatcatttgagtacattattaacttgaatcacaatttgccagagtttctttcgtcgt |
17521527 |
T |
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| Q |
215 |
tcttggatgtcaaattaaggaaaggtttcgaaggaaatagtgaggaaattattcttgacaaggtgatgatgt |
286 |
Q |
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| T |
17521528 |
tcttggatgtcaaattaaggaaaggtttcgaaggaaatagtgaggaaattattcttgacaaggtggtgatgt |
17521599 |
T |
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