View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20099_low_29 (Length: 295)
Name: NF20099_low_29
Description: NF20099
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20099_low_29 |
 | |
|
| [»] scaffold0566 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 169; Significance: 1e-90; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 6077778 - 6077566
Alignment:
| Q |
1 |
agaactggtcaatcctcaattctcatttgcaattgtcaattagaaagagagagaaactgccataaatcaccctattatatgtacttcattgataaatgta |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
6077778 |
agaactggtcaatcctcaattctcatttgcaattgtcaaatagaaagagagagaaactgccataaatcaccctattatatgtacttcaatgataaatgta |
6077679 |
T |
|
| Q |
101 |
gcaagtataaaaaagctgatgattccttnnnnnnnnctgatgattgaaataaaatcgtcattgttttattttgagatagaaattgagagagataatataa |
200 |
Q |
| |
|
|||||||||||||| |||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6077678 |
acaagtataaaaaagttgatgattccttaaaaaaaactaatgattgaaataaaatcgtcattgttttattttgagatagaaattgagagagataatataa |
6077579 |
T |
|
| Q |
201 |
gagaattcttcac |
213 |
Q |
| |
|
||||||||||||| |
|
|
| T |
6077578 |
gagaattcttcac |
6077566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 238 - 277
Target Start/End: Complemental strand, 6077548 - 6077509
Alignment:
| Q |
238 |
tataaggaagaaagtcattggaaggaacgcatagccttgt |
277 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
6077548 |
tataaagaagaaagtcattggaaggaacgcatagccttgt |
6077509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 9 - 73
Target Start/End: Original strand, 27273139 - 27273203
Alignment:
| Q |
9 |
tcaatcctcaattctcatttgcaattgtcaattagaaagagagagaaactgccataaatcaccct |
73 |
Q |
| |
|
||||||||||||||||||| |||||||| || ||||||||||| ||||||||||||||||||||| |
|
|
| T |
27273139 |
tcaatcctcaattctcattagcaattgtaaaatagaaagagagtgaaactgccataaatcaccct |
27273203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 9 - 73
Target Start/End: Original strand, 13550396 - 13550462
Alignment:
| Q |
9 |
tcaatcctcaattctcatttgcaattgtcaattagaa--agagagagaaactgccataaatcaccct |
73 |
Q |
| |
|
||||||||||||||||||| |||||| || | ||||| |||||||||||||| ||||||||||||| |
|
|
| T |
13550396 |
tcaatcctcaattctcattagcaattttccaatagaaagagagagagaaactgtcataaatcaccct |
13550462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0566 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0566
Description:
Target: scaffold0566; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 76 - 114
Target Start/End: Complemental strand, 8311 - 8273
Alignment:
| Q |
76 |
tatatgtacttcattgataaatgtagcaagtataaaaaa |
114 |
Q |
| |
|
||||||||||||| ||||||||||||||||||| ||||| |
|
|
| T |
8311 |
tatatgtacttcaatgataaatgtagcaagtatgaaaaa |
8273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University