View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20099_low_34 (Length: 251)
Name: NF20099_low_34
Description: NF20099
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20099_low_34 |
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| [»] scaffold0179 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 894573 - 894378
Alignment:
| Q |
1 |
aaattggtgtagccttttttctattccataattaccctttagttctttcacagatttataagataaccgcatacaagtttgtagtttacatttgaaataa |
100 |
Q |
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| T |
894573 |
aaattggtgtagccttttttctattccataattaccctttagttctttcacaaatttataagataaccgcatacaagtttgtaatttacatttgaaataa |
894474 |
T |
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| Q |
101 |
ccacctacataaattacaagaaaagagtaactggtttattggtcctttgcaaataatacaaaaaagaaaattgtaattgaagagtgaggttgaggg |
196 |
Q |
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| T |
894473 |
ccacctacataaattacaagaaaagagtaactggtttattggtcctttgcaaataatacaaaaaagaaaattgtaattgaagagtgaggttgaggg |
894378 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0179 (Bit Score: 125; Significance: 2e-64; HSPs: 1)
Name: scaffold0179
Description:
Target: scaffold0179; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 4 - 229
Target Start/End: Original strand, 6123 - 6361
Alignment:
| Q |
4 |
ttggtgtagccttttttctattccataattaccctttagttctttcacagatttataagataaccgcatacaagtttgtagtttacatttgaaataacca |
103 |
Q |
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| T |
6123 |
ttggtgtagtattttttctatcccataattaccctttagttctttcacaaatttatcaga-----gcatacaagtttgtaatttacatttgaaataacca |
6217 |
T |
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| Q |
104 |
cctacataaattacaagaaaagagtaactggtttattggtcctttgcaaata------------------atacaaaaaagaaaattgtaattgaagagt |
185 |
Q |
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| T |
6218 |
cctacagaagttataagaaaagagtaactggtttattggtcctttgcaaataatacaaaactgccgtattatacaaaaaagaaaattgtaattgaagagt |
6317 |
T |
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| Q |
186 |
gaggttgagggaacggggatgaggggatccctggtggtaacaaa |
229 |
Q |
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| T |
6318 |
gaggttgagggaacggggaagaggggatccctggtggtaacaaa |
6361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 41
Target Start/End: Original strand, 22928142 - 22928179
Alignment:
| Q |
4 |
ttggtgtagccttttttctattccataattacccttta |
41 |
Q |
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| T |
22928142 |
ttggtgtagccttttttccattccaaaattacccttta |
22928179 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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