View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20099_low_35 (Length: 249)
Name: NF20099_low_35
Description: NF20099
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20099_low_35 |
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Alignment Details
Target: chr5 (Bit Score: 201; Significance: 1e-110; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 18144182 - 18143942
Alignment:
| Q |
1 |
taattaagtgaaaatttgcttaagtagaaggaagagtaacacatcattgttttgcttaaatatgttaccaacttaatgatggtaggattacatgttaaaa |
100 |
Q |
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| T |
18144182 |
taattaagtgaaaatttgcttaagtagaaggaggagtaacacatcattgttttgcttaaatatgttactaacttaatgatggtaggattatatgttaaaa |
18144083 |
T |
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| Q |
101 |
tgttttaatggtgtgaaattatgaattgcaggacatttttgcacattttctgcaaaaataatttgcttcatttagattattacatgtcatgacaaatggg |
200 |
Q |
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| T |
18144082 |
tgttttaatggtgtgaaattttgaattgcacgacatttttgcacattttctgcaaaaataatttactttatttaaattattacatgtcatgacaaatggg |
18143983 |
T |
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| Q |
201 |
ataaagttgaaggatatgtgtgtgatttcccttatattctt |
241 |
Q |
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| T |
18143982 |
ataaagttgaaggatatgtgtgtaatttcccttattttctt |
18143942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 49 - 174
Target Start/End: Complemental strand, 18142619 - 18142493
Alignment:
| Q |
49 |
gttttgcttaaatatgttaccaacttaatgatggtaggattacatgttaaaatgt--tttaatggtgtgaaattatgaattgcagga-catttttgcaca |
145 |
Q |
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| T |
18142619 |
gtttcgcttaaacatattactaacttgatgatggtgttattacatgttaaagtgtgttttaatggtgtgaaattatgaattacgtgaccttttttgcaca |
18142520 |
T |
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| Q |
146 |
ttttctgcaaaaataatttgcttcattta |
174 |
Q |
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| T |
18142519 |
tttcatg--aaagtaatttgcttcattta |
18142493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 184 - 217
Target Start/End: Complemental strand, 18141374 - 18141341
Alignment:
| Q |
184 |
atgtcatgacaaatgggataaagttgaaggatat |
217 |
Q |
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| T |
18141374 |
atgtcatgacaaatgggataaagttgaaggatat |
18141341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 184 - 217
Target Start/End: Complemental strand, 18142466 - 18142433
Alignment:
| Q |
184 |
atgtcatgacaaatgggataaagttgaaggatat |
217 |
Q |
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| T |
18142466 |
atgtcatgacaaatgggataaaattgaaggatat |
18142433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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