View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20099_low_37 (Length: 247)
Name: NF20099_low_37
Description: NF20099
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20099_low_37 |
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Alignment Details
Target: chr3 (Bit Score: 128; Significance: 3e-66; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 14 - 232
Target Start/End: Original strand, 2593550 - 2593768
Alignment:
| Q |
14 |
agaaacaaattgtgagtgtttgactcatcaaacaaacaaattattagcacaaaatcaccaaagaaacaaattgtgagcacttgacttccccaaacaatca |
113 |
Q |
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| T |
2593550 |
agaaacaaattgtgagcacttgactcatcaaacaaacaaattatgagcacaaactcaccaaagaa-caaattgtgagcacttgacttccccaaacaacca |
2593648 |
T |
|
| Q |
114 |
aattgtgagcacttgact-nnnnnnnncatgcgaaatcaagtgaaaccaaatcaatttgaaccaaactaaatcaaacaaaactaaaccaagagaaattga |
212 |
Q |
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|||||||||||||||||| ||| ||||| ||||||||||||||||||||||||||||||||||||||| |||| |||||||||| ||||| | |
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| T |
2593649 |
aattgtgagcacttgactaaaaaaaaacatacgaaaccaagtgaaaccaaatcaatttgaaccaaactaaatcaaataaaaataaaccaagataaattaa |
2593748 |
T |
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| Q |
213 |
agaacccatgtgaatcaaaa |
232 |
Q |
| |
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|||||| ||||||||||||| |
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| T |
2593749 |
agaaccaatgtgaatcaaaa |
2593768 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 69 - 125
Target Start/End: Original strand, 2593544 - 2593599
Alignment:
| Q |
69 |
caccaaagaaacaaattgtgagcacttgacttccccaaacaatcaaattgtgagcac |
125 |
Q |
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| T |
2593544 |
caccaaagaaacaaattgtgagcacttgac-tcatcaaacaaacaaattatgagcac |
2593599 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 146 - 232
Target Start/End: Original strand, 1961450 - 1961537
Alignment:
| Q |
146 |
aaatcaagtgaaaccaaatcaatttgaaccaaactaaatcaaacaaaactaa-accaagagaaattgaagaacccatgtgaatcaaaa |
232 |
Q |
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||||||| ||||| ||||||||| |||||||||||||| | |||| |||||| |||||| ||||||||||||| ||||||||||||| |
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| T |
1961450 |
aaatcaattgaaatcaaatcaatctgaaccaaactaaaccgaacagaactaatcccaagacaaattgaagaaccaatgtgaatcaaaa |
1961537 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 169 - 218
Target Start/End: Complemental strand, 16870571 - 16870522
Alignment:
| Q |
169 |
ttgaaccaaactaaatcaaacaaaactaaaccaagagaaattgaagaacc |
218 |
Q |
| |
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|||||||||||||||| |||||||||||| ||||| || |||||||||| |
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|
| T |
16870571 |
ttgaaccaaactaaattgaacaaaactaaatcaagacaacttgaagaacc |
16870522 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 169 - 218
Target Start/End: Original strand, 46963970 - 46964019
Alignment:
| Q |
169 |
ttgaaccaaactaaatcaaacaaaactaaaccaagagaaattgaagaacc |
218 |
Q |
| |
|
||||||||||||||||| |||||||||||| ||||| || |||||||||| |
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|
| T |
46963970 |
ttgaaccaaactaaatcgaacaaaactaaatcaagacaacttgaagaacc |
46964019 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 155 - 218
Target Start/End: Original strand, 11828728 - 11828791
Alignment:
| Q |
155 |
gaaaccaaatcaatttgaaccaaactaaatcaaacaaaactaaaccaagagaaattgaagaacc |
218 |
Q |
| |
|
||||||||||||| |||||||||||||| | || |||||||||||||| |||| |||||||| |
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|
| T |
11828728 |
gaaaccaaatcaaactgaaccaaactaaaccgaaggaaactaaaccaagataaatcgaagaacc |
11828791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 68 - 131
Target Start/End: Original strand, 38584127 - 38584189
Alignment:
| Q |
68 |
tcaccaaagaaacaaattgtgagcacttgacttccccaaacaatcaaattgtgagcacttgact |
131 |
Q |
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|||||||| || |||||||||||||||| ||| | |||||| | |||||||||||||||||||| |
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|
| T |
38584127 |
tcaccaaacaaccaaattgtgagcacttaact-caccaaactaccaaattgtgagcacttgact |
38584189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 169 - 218
Target Start/End: Complemental strand, 8986133 - 8986084
Alignment:
| Q |
169 |
ttgaaccaaactaaatcaaacaaaactaaaccaagagaaattgaagaacc |
218 |
Q |
| |
|
|||||||||||||||| |||||||||||| ||||| || |||||||||| |
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|
| T |
8986133 |
ttgaaccaaactaaattgaacaaaactaaatcaagacaacttgaagaacc |
8986084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 68 - 127
Target Start/End: Original strand, 19825108 - 19825166
Alignment:
| Q |
68 |
tcaccaaagaaacaaattgtgagcacttgacttccccaaacaatcaaattgtgagcactt |
127 |
Q |
| |
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|||||||| || ||||||||||||||| |||| | |||||||| |||||||||||||||| |
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| T |
19825108 |
tcaccaaacaaccaaattgtgagcactcgact-cgccaaacaaccaaattgtgagcactt |
19825166 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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