View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20099_low_39 (Length: 237)
Name: NF20099_low_39
Description: NF20099
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20099_low_39 |
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Alignment Details
Target: chr8 (Bit Score: 211; Significance: 1e-116; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 37062153 - 37061934
Alignment:
| Q |
1 |
tattatacattatttgcctatatttcaacccctgaccttaaaatttgaactcttgcattatttatatccaatagcttttagtaggactcttaataagagt |
100 |
Q |
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| T |
37062153 |
tattatacattatttgcctatatttcaacccctgaccttaaaatttgaactcttgcattatttatatccaatagcttttagtaggactcttaataagagt |
37062054 |
T |
|
| Q |
101 |
aggactagcaggactcttaatatcagattttttcagaagagagtccctagaagattttagttggctagcagctattagttggcgaaccgcaactcttatg |
200 |
Q |
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| T |
37062053 |
aggactagcaggactcttaatatcagattttttcaga--agagtccctagaagattttagttggctagcagctattagttggcgaaccgcaactcttatg |
37061956 |
T |
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| Q |
201 |
ccaattcgttcatctggattgt |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
37061955 |
ccaattcgttcatctggattgt |
37061934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 165
Target Start/End: Complemental strand, 37069506 - 37069344
Alignment:
| Q |
1 |
tattatacattatttgcctatatttcaacccctgaccttaaaatttgaactcttgcattatttatatccaatagcttttagtaggactcttaataagagt |
100 |
Q |
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|||||| ||||||||||||||| ||||||||||||||| ||| ||| |||||||||||||||||| | |||||||||||||||||| | |||||||||| |
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| T |
37069506 |
tattatgcattatttgcctatacttcaacccctgacctcaaa-tttcaactcttgcattatttat--caaatagcttttagtaggacacataataagagt |
37069410 |
T |
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| Q |
101 |
aggactagcaggactcttaatatcagatt-ttttcagaagagagtccctagaagattttagttggc |
165 |
Q |
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|||| |||||||||||||||||||||||| ||||||||||||||||||||| || ||| ||||||| |
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| T |
37069409 |
aggattagcaggactcttaatatcagatttttttcagaagagagtccctagcagctttaagttggc |
37069344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 177 - 222
Target Start/End: Complemental strand, 37069350 - 37069305
Alignment:
| Q |
177 |
agttggcgaaccgcaactcttatgccaattcgttcatctggattgt |
222 |
Q |
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||||||||||||||||||||||||||||| || ||||||||||||| |
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| T |
37069350 |
agttggcgaaccgcaactcttatgccaatgcgctcatctggattgt |
37069305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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