View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20099_low_4 (Length: 604)
Name: NF20099_low_4
Description: NF20099
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20099_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 426; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 18 - 509
Target Start/End: Original strand, 2178257 - 2178735
Alignment:
| Q |
18 |
attgacatatccgtaagagttaaccacacattataattagatctaattagtgcagtaatcctgcattacacgtaaatcttacagtgtgtgttgttttcaa |
117 |
Q |
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| T |
2178257 |
attgacatatccgtaagagctaaccacacattataattagatctaattagtgcagtaatcctgcattacacgtaaatcttacagcgtgtgttgttttcaa |
2178356 |
T |
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| Q |
118 |
gcactaaattcttctgtcaccacttgcagttaacttaagatatagttatcgtgaaggacccgttcaacaacttaattcattcgccatgcaattaagtcta |
217 |
Q |
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| T |
2178357 |
gcactaaattcttctgtcaccacttgcagttaacttaagatatagttatcgtgaaggacccgtt---caacttaattcattcgccatgcaattaagtcta |
2178453 |
T |
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| Q |
218 |
gtgtgatggcatagctactttgaggctatctcacacaactatcatgcacacgtctattaatcgaatataaactcatgtgtcatgtcgtgttagtgtcgga |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2178454 |
gtgtgatggcatagctactttgaggctatctcacacaactatcatgcacacgtctattaatcgaatataaactcatgtgtcatgtcgtgttagtgtcgga |
2178553 |
T |
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| Q |
318 |
cataattagatatgtatttgatcgcaagtaaataacaagtaaataaaccatgtagtaattatttaagaaatgtatcttcttgaaattcttgaagattaga |
417 |
Q |
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| T |
2178554 |
c---attagatatgtatttgatcgcaagtaaa-------taaataaaccatgtagtaattatttaagaaatgtatcttcttgaaattctagaagattaga |
2178643 |
T |
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| Q |
418 |
aggtatgcaatgatagattgaaagtgcacccaagacgactagatattcatatattattgcacagctgcacagaatgcataacatatcactaa |
509 |
Q |
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| T |
2178644 |
aggtatgcaatgatagattgaaagtgcacccaagacgactagatattcatatattattgcacagctgcacagaatgcataacatatcactaa |
2178735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 506 - 593
Target Start/End: Original strand, 2179538 - 2179624
Alignment:
| Q |
506 |
ctaaaaatggaatcgaagtacaacttgatagccacaaaaagacaaaacacattcacttgtctcctttttgttcttgttgtgaaagtat |
593 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
2179538 |
ctaaaaatagaatcgaagtacaacttgatagccacaaaaagacaaa-cacattcacttgtctcctttttgttcttgttgtgaaagtat |
2179624 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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