View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20099_low_41 (Length: 234)
Name: NF20099_low_41
Description: NF20099
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20099_low_41 |
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Alignment Details
Target: chr8 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 36313163 - 36313377
Alignment:
| Q |
1 |
ccaatacaagctctggctgtggaagcaaatggttttgcagcctcataaccaaaggtacccttgtacaaattccttgtccacgtggcaagctgataccagc |
100 |
Q |
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| T |
36313163 |
ccaatacaagctctggctgtggaagcaaatggttttgcagcctcataaccaaaggtacccttgtacaaattccttgtccacgtggcaagctgataccagc |
36313262 |
T |
|
| Q |
101 |
taatgattcaaggacactagactttccagatgattgatctccaacaacaacaatggttggaagctggattccctctttggcaatgttgagacgccttaga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36313263 |
taatgattcaaggacactagactttccagatgattgatctccaacaacaacaatggttggaagctggattccctctttggcaatgttgagacgccttaga |
36313362 |
T |
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| Q |
201 |
ttttcaagagcatca |
215 |
Q |
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||||||||||||||| |
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| T |
36313363 |
ttttcaagagcatca |
36313377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 69 - 214
Target Start/End: Original strand, 36290748 - 36290893
Alignment:
| Q |
69 |
attccttgtccacgtggcaagctgataccagctaatgattcaaggacactagactttccagatgattgatctccaacaacaacaatggttggaagctgga |
168 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| || ||||||||||||||||||||||| ||||||||||| | |
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| T |
36290748 |
attccttgtccacgtggcaagctgataccagctaaagattcaaggacactggactttcctgaagattgatctccaacaacaacaattgttggaagctgaa |
36290847 |
T |
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| Q |
169 |
ttccctctttggcaatgttgagacgccttagattttcaagagcatc |
214 |
Q |
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|||| ||||||||||||||||||||||||||||| ||||| ||||| |
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| T |
36290848 |
ttccttctttggcaatgttgagacgccttagattctcaagggcatc |
36290893 |
T |
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