View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20099_low_42 (Length: 233)
Name: NF20099_low_42
Description: NF20099
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20099_low_42 |
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Alignment Details
Target: chr1 (Bit Score: 205; Significance: 1e-112; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 33828804 - 33828592
Alignment:
| Q |
1 |
tttgttcttccattttgcagattgacaaccatcgtaataacctaattcaggtgccttttatgtttctgcaccttgaatattttctatcaatattttgtaa |
100 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33828804 |
tttgttcttccattttgcagcttgacaaccatcgtaataacctaattcaggtgccttttatgtttctgcaccttgaatattttctatcaatattttgtat |
33828705 |
T |
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| Q |
101 |
aatgtattttacttaagtttgctaaacctttcaacattcatgcagttggagctctttcttacctctggaaccattggcctatctattttctctctggtgg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33828704 |
aatgtattttacttaagtttgctaaacctttcaacattcatgcagttggagctctttcttacctctggaaccattggcctatctattttctctctggtgg |
33828605 |
T |
|
| Q |
201 |
ctggtatttttgg |
213 |
Q |
| |
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||||||||||||| |
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| T |
33828604 |
ctggtatttttgg |
33828592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 33839162 - 33839374
Alignment:
| Q |
1 |
tttgttcttccattttgcagattgacaaccatcgtaataacctaattcaggtgccttttatgtttctgcaccttgaatattttctatcaatattttgtaa |
100 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33839162 |
tttgttcttccattttgcagcttgacaaccatcgtaataacctaattcaggtgccttttatgtttctgcaccttgaatattttctatcaatattttgtat |
33839261 |
T |
|
| Q |
101 |
aatgtattttacttaagtttgctaaacctttcaacattcatgcagttggagctctttcttacctctggaaccattggcctatctattttctctctggtgg |
200 |
Q |
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| T |
33839262 |
aatgtattttacttaagtttgctaaacctttcaacattcatgcagttggagctctttcttacctctggaaccattggcctatctattttctctctggtgg |
33839361 |
T |
|
| Q |
201 |
ctggtatttttgg |
213 |
Q |
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||||||||||||| |
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| T |
33839362 |
ctggtatttttgg |
33839374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 141 - 213
Target Start/End: Complemental strand, 33806624 - 33806552
Alignment:
| Q |
141 |
tgcagttggagctctttcttacctctggaaccattggcctatctattttctctctggtggctggtatttttgg |
213 |
Q |
| |
|
||||||||||||||||||||| ||||||||| || ||||| || | | |||||||||||||||||||||||| |
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| T |
33806624 |
tgcagttggagctctttcttagctctggaactgtttgcctagctttctactctctggtggctggtatttttgg |
33806552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 33806792 - 33806724
Alignment:
| Q |
1 |
tttgttcttccattttgcagattgacaaccatcgtaataacctaattcaggtgccttttatgtttctgc |
69 |
Q |
| |
|
|||||| ||||||||||||| ||||||||||||||||| | || |||||||| |||| ||||||||||| |
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| T |
33806792 |
tttgtttttccattttgcagcttgacaaccatcgtaatcagcttattcaggtaccttctatgtttctgc |
33806724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 141 - 213
Target Start/End: Complemental strand, 33866094 - 33866022
Alignment:
| Q |
141 |
tgcagttggagctctttcttacctctggaaccattggcctatctattttctctctggtggctggtatttttgg |
213 |
Q |
| |
|
||||||||||||||||||||| ||||||||| || ||||| || | | |||||||||||||||||||||||| |
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| T |
33866094 |
tgcagttggagctctttcttagctctggaactgtttgcctagctttctactctctggtggctggtatttttgg |
33866022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 33866262 - 33866194
Alignment:
| Q |
1 |
tttgttcttccattttgcagattgacaaccatcgtaataacctaattcaggtgccttttatgtttctgc |
69 |
Q |
| |
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|||||| ||||||||||||| ||||||||||||||||| | || |||||||| |||| ||||||||||| |
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| T |
33866262 |
tttgtttttccattttgcagcttgacaaccatcgtaatcagcttattcaggtaccttctatgtttctgc |
33866194 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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