View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20099_low_44 (Length: 227)

Name: NF20099_low_44
Description: NF20099
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20099_low_44
NF20099_low_44
[»] chr6 (1 HSPs)
chr6 (1-227)||(6474271-6474501)
[»] chr7 (3 HSPs)
chr7 (95-153)||(8982795-8982853)
chr7 (163-207)||(40110762-40110806)
chr7 (163-207)||(43955604-43955648)
[»] chr1 (2 HSPs)
chr1 (163-207)||(47165216-47165260)
chr1 (163-207)||(15034684-15034728)
[»] chr3 (2 HSPs)
chr3 (160-207)||(31189397-31189444)
chr3 (163-212)||(5415803-5415852)
[»] chr5 (6 HSPs)
chr5 (167-212)||(8255047-8255092)
chr5 (163-212)||(37722895-37722944)
chr5 (163-207)||(3563302-3563346)
chr5 (163-207)||(22766977-22767021)
chr5 (163-207)||(26281270-26281314)
chr5 (177-213)||(28828451-28828487)
[»] chr4 (2 HSPs)
chr4 (163-208)||(41139497-41139542)
chr4 (163-207)||(1539666-1539710)
[»] scaffold0048 (1 HSPs)
scaffold0048 (163-207)||(82968-83012)
[»] chr8 (2 HSPs)
chr8 (177-213)||(13404846-13404882)
chr8 (163-207)||(17110959-17111003)
[»] chr2 (1 HSPs)
chr2 (175-207)||(44256209-44256241)


Alignment Details
Target: chr6 (Bit Score: 173; Significance: 4e-93; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 6474501 - 6474271
Alignment:
Q  1 ttttcatacactaatcttcttagaacttgcttatatta---aattagaagttgttggagctaagtacattaaggaactttaaagtaatgctgtttaattt 97  Q
    |||||||||||||||||||||||||||| |||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6474501 ttttcatacactaatcttcttagaacttacttatattattaaattagaagttgttggagctaagtacattaaggaactttaaagtaatgctgtttaattt 6474402  T
Q  98 agagtgccttctaagatagaaatttggaaagtgaaagctcgaaaaatcattatgcattatactttaccttaaagtattcgaattccctcaaagc----at 193  Q
    |||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||   |||||||||||||||||||||||||||||| |    ||    
T  6474401 agagtgccttgtaagatagaaatttggaaagtgaaagctagaaaaatcattatgcatta---tttaccttaaagtattcgaattccctcaaaacattaat 6474305  T
Q  194 tacattacctcaaagtatttgaaaaagtcttttt 227  Q
    ||||||||||||||||||||||||||||||||||    
T  6474304 tacattacctcaaagtatttgaaaaagtcttttt 6474271  T

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Target: chr7 (Bit Score: 35; Significance: 0.00000000008; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 95 - 153
Target Start/End: Original strand, 8982795 - 8982853
Alignment:
Q  95 tttagagtgccttctaagatagaaatttggaaagtgaaagctcgaaaaatcattatgca 153  Q
    |||| ||||| || ||||||||||||||||||||||||||   ||||||||||||||||    
T  8982795 tttatagtgctttgtaagatagaaatttggaaagtgaaagagagaaaaatcattatgca 8982853  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 207
Target Start/End: Complemental strand, 40110806 - 40110762
Alignment:
Q  163 accttaaagtattcgaattccctcaaagcattacattacctcaaa 207  Q
    ||||||||||| | ||||||||||||| ||||||||| |||||||    
T  40110806 accttaaagtagttgaattccctcaaaacattacattccctcaaa 40110762  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 207
Target Start/End: Original strand, 43955604 - 43955648
Alignment:
Q  163 accttaaagtattcgaattccctcaaagcattacattacctcaaa 207  Q
    ||||||||||| | ||||||||||||| ||||||||| |||||||    
T  43955604 accttaaagtagttgaattccctcaaaacattacattccctcaaa 43955648  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 207
Target Start/End: Original strand, 47165216 - 47165260
Alignment:
Q  163 accttaaagtattcgaattccctcaaagcattacattacctcaaa 207  Q
    ||||||||||||| ||||||||||||| ||||||||| |||||||    
T  47165216 accttaaagtatttgaattccctcaaaacattacatttcctcaaa 47165260  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 207
Target Start/End: Complemental strand, 15034728 - 15034684
Alignment:
Q  163 accttaaagtattcgaattccctcaaagcattacattacctcaaa 207  Q
    ||||||||||| | ||||||||||||| ||||||||| |||||||    
T  15034728 accttaaagtagttgaattccctcaaaacattacattccctcaaa 15034684  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 160 - 207
Target Start/End: Original strand, 31189397 - 31189444
Alignment:
Q  160 tttaccttaaagtattcgaattccctcaaagcattacattacctcaaa 207  Q
    ||||||| |||||||| |||||| |||||| |||||||||||||||||    
T  31189397 tttacctcaaagtatttgaattctctcaaaacattacattacctcaaa 31189444  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 163 - 212
Target Start/End: Complemental strand, 5415852 - 5415803
Alignment:
Q  163 accttaaagtattcgaattccctcaaagcattacattacctcaaagtatt 212  Q
    ||||||||||| | ||||||||||||| ||||||||| ||||||| ||||    
T  5415852 accttaaagtagttgaattccctcaaaacattacattccctcaaaatatt 5415803  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 167 - 212
Target Start/End: Complemental strand, 8255092 - 8255047
Alignment:
Q  167 taaagtattcgaattccctcaaagcattacattacctcaaagtatt 212  Q
    |||| |||| ||||||||||||| ||||||||||||| ||||||||    
T  8255092 taaaatatttgaattccctcaaaacattacattaccttaaagtatt 8255047  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 163 - 212
Target Start/End: Original strand, 37722895 - 37722944
Alignment:
Q  163 accttaaagtattcgaattccctcaaagcattacattacctcaaagtatt 212  Q
    |||| |||||||| ||||||||||||| ||||||||| ||||||| ||||    
T  37722895 acctcaaagtatttgaattccctcaaaacattacattccctcaaaatatt 37722944  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 207
Target Start/End: Complemental strand, 3563346 - 3563302
Alignment:
Q  163 accttaaagtattcgaattccctcaaagcattacattacctcaaa 207  Q
    ||||||||||| | ||||||||||||| ||||||||| |||||||    
T  3563346 accttaaagtagttgaattccctcaaaacattacattccctcaaa 3563302  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 207
Target Start/End: Complemental strand, 22767021 - 22766977
Alignment:
Q  163 accttaaagtattcgaattccctcaaagcattacattacctcaaa 207  Q
    ||||||||||||| ||||||||||||| ||||| ||| |||||||    
T  22767021 accttaaagtatttgaattccctcaaaacattatattccctcaaa 22766977  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 207
Target Start/End: Original strand, 26281270 - 26281314
Alignment:
Q  163 accttaaagtattcgaattccctcaaagcattacattacctcaaa 207  Q
    ||||||||||| | ||||||||||||| ||||||||| |||||||    
T  26281270 accttaaagtagttgaattccctcaaaacattacattccctcaaa 26281314  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 213
Target Start/End: Original strand, 28828451 - 28828487
Alignment:
Q  177 gaattccctcaaagcattacattacctcaaagtattt 213  Q
    ||||||||||||| ||||||||||||||||| |||||    
T  28828451 gaattccctcaaaacattacattacctcaaaatattt 28828487  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 163 - 208
Target Start/End: Complemental strand, 41139542 - 41139497
Alignment:
Q  163 accttaaagtattcgaattccctcaaagcattacattacctcaaag 208  Q
    |||| |||||||| ||||| ||||||| ||||||||||||||||||    
T  41139542 acctaaaagtatttgaatttcctcaaaacattacattacctcaaag 41139497  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 207
Target Start/End: Complemental strand, 1539710 - 1539666
Alignment:
Q  163 accttaaagtattcgaattccctcaaagcattacattacctcaaa 207  Q
    |||| |||||||| ||||||||||||| ||||||||| |||||||    
T  1539710 acctcaaagtatttgaattccctcaaaacattacattccctcaaa 1539666  T

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Target: scaffold0048 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 207
Target Start/End: Complemental strand, 83012 - 82968
Alignment:
Q  163 accttaaagtattcgaattccctcaaagcattacattacctcaaa 207  Q
    ||||||||||| | ||||||||||||| ||||||||| |||||||    
T  83012 accttaaagtagttgaattccctcaaaacattacattccctcaaa 82968  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 213
Target Start/End: Complemental strand, 13404882 - 13404846
Alignment:
Q  177 gaattccctcaaagcattacattacctcaaagtattt 213  Q
    ||||||||||||| ||||||||||||||||| |||||    
T  13404882 gaattccctcaaaacattacattacctcaaaatattt 13404846  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 207
Target Start/End: Original strand, 17110959 - 17111003
Alignment:
Q  163 accttaaagtattcgaattccctcaaagcattacattacctcaaa 207  Q
    ||||||||||| | ||||||||||||| ||||||||| |||||||    
T  17110959 accttaaagtagttgaattccctcaaaacattacattccctcaaa 17111003  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 207
Target Start/End: Original strand, 44256209 - 44256241
Alignment:
Q  175 tcgaattccctcaaagcattacattacctcaaa 207  Q
    ||||||||||||||| |||||||||||||||||    
T  44256209 tcgaattccctcaaaacattacattacctcaaa 44256241  T

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