View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20099_low_45 (Length: 227)
Name: NF20099_low_45
Description: NF20099
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20099_low_45 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 5 - 222
Target Start/End: Complemental strand, 8357759 - 8357542
Alignment:
| Q |
5 |
tagttcttgtataagaaagtcttgttgcgtggattccttcaaggattgtgtcacaacaacgacatgcttctaagctagcttcgaaatagtcaactagaag |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8357759 |
tagttcttgtataagaaagtcttgttgcgtggattccttcaaggattgtgtcacaacaacgacatgcttctaagctagcttcgaaatagtcaactagaag |
8357660 |
T |
|
| Q |
105 |
atgatgcaccttaaaattttgtgtcatgtttgttattatttcttgtcggggttcgagcaaatactcggtgagattaatgcatataggaggaagagatgtt |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8357659 |
atgatgcaccttaaaattttgtgtcatgtttgttattatttcttgtcggggttcgagcaaatactcggtgagattaatgcatataggaggaagagatgtt |
8357560 |
T |
|
| Q |
205 |
gaacaagaggtagagagt |
222 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
8357559 |
gaacaagaggtagagagt |
8357542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 136; Significance: 4e-71; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 8 - 199
Target Start/End: Original strand, 28593829 - 28594020
Alignment:
| Q |
8 |
ttcttgtataagaaagtcttgttgcgtggattccttcaaggattgtgtcacaacaacgacatgcttctaagctagcttcgaaatagtcaactagaagatg |
107 |
Q |
| |
|
||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||| ||||||||||| |
|
|
| T |
28593829 |
ttcttgtataagaaattcttgttgagtggattccttcaaggattgtgtcacaacaacgacttgcttctaagctagcatcgaaatagttaactagaagatc |
28593928 |
T |
|
| Q |
108 |
atgcaccttaaaattttgtgtcatgtttgttattatttcttgtcggggttcgagcaaatactcggtgagattaatgcatataggaggaagag |
199 |
Q |
| |
|
|||||||||||| ||| || ||||||||||||| ||||| |||||||||||||||||| ||||||||||||| | ||||||||||||||||| |
|
|
| T |
28593929 |
atgcaccttaaagtttcgtctcatgtttgttatgatttcatgtcggggttcgagcaaagactcggtgagattcaggcatataggaggaagag |
28594020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 40 - 119
Target Start/End: Complemental strand, 53447259 - 53447180
Alignment:
| Q |
40 |
ccttcaaggattgtgtcacaacaacgacatgcttctaagctagcttcgaaatagtcaactagaagatgatgcaccttaaa |
119 |
Q |
| |
|
|||| ||||||| |||| |||||| || ||||||||||||| ||||| || ||||| ||||||||||||||||||||||| |
|
|
| T |
53447259 |
ccttgaaggattttgtcgcaacaaagatatgcttctaagctggcttcaaagtagtccactagaagatgatgcaccttaaa |
53447180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University