View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20099_low_6 (Length: 581)
Name: NF20099_low_6
Description: NF20099
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20099_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 384; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 135 - 566
Target Start/End: Original strand, 20087730 - 20088162
Alignment:
| Q |
135 |
caatgctcaaaatcattatatctgcatgtttcttggttatttctcttcgaacataatgccaaaacatcatgtcttatttatatgttgaaatt-----caa |
229 |
Q |
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| T |
20087730 |
caatgctcaaaatcattatatctgcatgtttcttggttatttctcttgcaacatg----caaaacatcatgtcttatttatatgttgaaattcaattcaa |
20087825 |
T |
|
| Q |
230 |
ttcaattcatatctatttgatttgattttgatgccgaggtgttcttagttataattgcggtgtaaattttgtggtgcaggttaagtaagatgggaggtgg |
329 |
Q |
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| T |
20087826 |
ttcaattcatatctatttgatttgattttgatgccgaggtgttcttagttataattgcggtgtaaattttgtggtgcaggttaaataagatgggaggtgg |
20087925 |
T |
|
| Q |
330 |
gtttagggtacttcacttagtaaggccatttctatcattccttcctgaagttcagaccgcggacaggaaagtgccgtttagagagaaggtcatctatacg |
429 |
Q |
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| T |
20087926 |
gtttagggtacttcacttagtaaggccatttctatcattccttcctgaagttcagaccgcggacaggaaagtgccgtttagagagaaggtcatctatacg |
20088025 |
T |
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| Q |
430 |
gtgatctccctcttcatttttcttgtttgtagtcagcttcctctgtatggaatacactcgacaacaggtgcagatccattctattggatgcgtgttatcc |
529 |
Q |
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| T |
20088026 |
gtgatctccctcttcatttttcttgtttgtagtcagcttcctctgtatggaatacactcgacaacaggtgcagatccattctattggatgcgtgttatcc |
20088125 |
T |
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| Q |
530 |
ttgcttcaaaccgtggaactgttatggagcttggaat |
566 |
Q |
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| T |
20088126 |
ttgcttcaaaccgtggaactgttatggagcttggaat |
20088162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 315 - 566
Target Start/End: Original strand, 32556699 - 32556950
Alignment:
| Q |
315 |
taagatgggaggtgggtttagggtacttcacttagtaaggccatttctatcattccttcctgaagttcagaccgcggacaggaaagtgccgtttagagag |
414 |
Q |
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| T |
32556699 |
taagatgggtggtgggtttagggtgcttcacttagtaagaccgtttctctcgttccttcctgaagttcagactgctgacaggaaagtgccatttagagag |
32556798 |
T |
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| Q |
415 |
aaggtcatctatacggtgatctccctcttcatttttcttgtttgtagtcagcttcctctgtatggaatacactcgacaacaggtgcagatccattctatt |
514 |
Q |
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| T |
32556799 |
aaggtcatatatactgtgatctctcttttcattttcttggtctgcagtcagcttcctctatatgggatacactcgacaacaggtgcagatccgttctatt |
32556898 |
T |
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| Q |
515 |
ggatgcgtgttatccttgcttcaaaccgtggaactgttatggagcttggaat |
566 |
Q |
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| T |
32556899 |
ggatgcgtgttatccttgcttcaaaccgtggaactgtcatggagcttggaat |
32556950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 20087592 - 20087700
Alignment:
| Q |
1 |
atttgattaatatatggataattgaattcgtaagttctttgaattcatgaatctta----agtaatttgctttgtaatgtaatgtaatgtcgttgaattg |
96 |
Q |
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| T |
20087592 |
atttgattaatatatggataattgaattcgtaagttctttgaattcatgaatcttaactgagtaatttgctttgtaatgtaatgtaatgtcgttgaattg |
20087691 |
T |
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| Q |
97 |
gatattgtc |
105 |
Q |
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| T |
20087692 |
gatattgtc |
20087700 |
T |
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