View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20099_low_7 (Length: 563)

Name: NF20099_low_7
Description: NF20099
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20099_low_7
NF20099_low_7
[»] chr7 (6 HSPs)
chr7 (1-548)||(5288429-5288977)
chr7 (1-100)||(5311239-5311341)
chr7 (1-57)||(5285150-5285206)
chr7 (1-65)||(5303338-5303402)
chr7 (1-100)||(5315953-5316051)
chr7 (1-62)||(46706207-46706268)
[»] chr6 (1 HSPs)
chr6 (313-548)||(8034753-8034984)
[»] chr4 (2 HSPs)
chr4 (369-538)||(51380100-51380273)
chr4 (146-312)||(42965887-42966069)
[»] chr5 (1 HSPs)
chr5 (1-65)||(1505819-1505883)
[»] chr1 (3 HSPs)
chr1 (1-60)||(44142043-44142102)
chr1 (1-65)||(44129416-44129480)
chr1 (1-65)||(44133621-44133685)


Alignment Details
Target: chr7 (Bit Score: 525; Significance: 0; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 525; E-Value: 0
Query Start/End: Original strand, 1 - 548
Target Start/End: Complemental strand, 5288977 - 5288429
Alignment:
Q  1 ttaccattgaaactgttgttttacgtagtgtagccatatgagatgtttaattattttattttcattgatttcaaatttgtttaactttgatgtaaggatg 100  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  5288977 ttaccattgaaactgttgttttacgtagtgtggccatatgagatgtttaattattttattttcattgatttcaaatttgtttaacttttatgtaaggatg 5288878  T
Q  101 aagtagaaatctgcataacagattctgaatatagcagcaaacatgttgatgtgcaaataccatgtacaatcctatatttgtt-gtgccaatatgtctttg 199  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  5288877 aagtagaaatctgcataacagattctgaatatagcagcaaacatgttgatgtgcaaataccatgtacaatcctatatttgtttgtgccaatatgtctttg 5288778  T
Q  200 aaacaaattaaagtcaattttgatatcttgtgttctttttaagtgttccatgtcattcattatattttgtcaaggaaaatgtttccattcatttagtatt 299  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  5288777 aaacaaattaaagtcaattttgatatcttgtgttctttttaagtgttccatgtcattcattatattttgtcagggaaaatgtttccattcatttagtatt 5288678  T
Q  300 tgttctttttattagaagtttggtgtgatcatctatctatttgttgttcttcccaataacaattcatgttggaccaaaccttcaattaaccgtctcgtta 399  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5288677 tgttctttttattagaagtttggtgtgatcatctatctatttgttgttcttcccaataacaattcatgttggaccaaaccttcaattaaccgtctcgtta 5288578  T
Q  400 tcatcgttctcgatactctcatgtactcaacactcgtcgatcgcaaccaccattaccaatttaccattaattaactgtgttatgctatatttttaggttt 499  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  5288577 tcatcgttctcgatactctcatgtactcaacactcgtcgatcgcaaccaccattaccaatttacgattaattaactgtgttatgctatatttttaggttt 5288478  T
Q  500 gattttgttgctcccagtaccttctttcaaggttagttactgatctctg 548  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  5288477 gattttgttgctcccagtaccttctttcaaggttagttactgatctctg 5288429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 5311239 - 5311341
Alignment:
Q  1 ttaccattgaaactgttgttttacgtagtgtagccatatgagatgtttaattattttattttcatt----gatttcaaatttgtttaactttgatgtaag 96  Q
    ||||||||||||| |||||||| ||||||||  ||||||||||||||||| |||||||||||||||    |||||  |||||||||| |||| ||||| |    
T  5311239 ttaccattgaaacagttgttttgcgtagtgtgaccatatgagatgtttaa-tattttattttcatttatcgatttataatttgtttatcttttatgtatg 5311337  T
Q  97 gatg 100  Q
    ||||    
T  5311338 gatg 5311341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 5285150 - 5285206
Alignment:
Q  1 ttaccattgaaactgttgttttacgtagtgtagccatatgagatgtttaattatttt 57  Q
    ||||||||||||| |||||||| || ||||| ||||||||||||| |||||| ||||    
T  5285150 ttaccattgaaaccgttgttttgcgcagtgttgccatatgagatgcttaattttttt 5285206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 5303338 - 5303402
Alignment:
Q  1 ttaccattgaaactgttgttttacgtagtgtagccatatgagatgtttaattattttattttcat 65  Q
    |||| |||||||| |||||||| || ||||| || |||||||||| ||||||||||| |||||||    
T  5303338 ttacaattgaaacggttgttttgcgcagtgtcgctatatgagatgcttaattattttgttttcat 5303402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 5315953 - 5316051
Alignment:
Q  1 ttaccattgaaactgttgttttacgtagtgtagccatatgagatgtttaattattttattttcattgatttcaaatttgtttaactttgatgtaaggatg 100  Q
    ||||||||||||| |||||||| || || || || |||||||||| ||| ||||||| | |  || |||||||||||||||||| ||| |||||| ||||    
T  5315953 ttaccattgaaacggttgttttgcgcagcgtggctatatgagatgcttatttatttt-tatgtatcgatttcaaatttgtttaatttttatgtaatgatg 5316051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 46706268 - 46706207
Alignment:
Q  1 ttaccattgaaactgttgttttacgtagtgtagccatatgagatgtttaattattttatttt 62  Q
    ||||||| |||||||||||||| |  ||||| || |||||| ||| ||||||||||||||||    
T  46706268 ttaccatagaaactgttgttttgcacagtgtcgctatatgaaatgcttaattattttatttt 46706207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 155; Significance: 5e-82; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 155; E-Value: 5e-82
Query Start/End: Original strand, 313 - 548
Target Start/End: Original strand, 8034753 - 8034984
Alignment:
Q  313 agaagtttggtgtgatcatctatctatttgttgttcttcccaataacaattcatgttggaccaaaccttcaattaaccgtctcgttatcatcgttctcga 412  Q
    ||||||||||||||||||||||||||||||||||||||| |     |||||| |||||||||||||||| ||||||||||||||||| |||||||| |||    
T  8034753 agaagtttggtgtgatcatctatctatttgttgttcttctcc----caattcctgttggaccaaacctttaattaaccgtctcgttaccatcgttcccga 8034848  T
Q  413 tactctcatgtactcaacactcgtcgatcgcaaccaccattaccaatttaccattaattaactgtgttatgctatatttttaggtttgattttgttgctc 512  Q
    | |||||| ||| ||||||||||| |||| |||||||||||| |||||||| ||||||||||||||||||||||| || |||||||||||||||||||||    
T  8034849 tgctctcaagtattcaacactcgttgatcacaaccaccattatcaatttacaattaattaactgtgttatgctatgttcttaggtttgattttgttgctc 8034948  T
Q  513 ccagtaccttctttcaaggttagttactgatctctg 548  Q
    ||||||||||||||||||||| ||||||||||||||    
T  8034949 ccagtaccttctttcaaggttggttactgatctctg 8034984  T

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Target: chr4 (Bit Score: 79; Significance: 1e-36; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 369 - 538
Target Start/End: Complemental strand, 51380273 - 51380100
Alignment:
Q  369 tggaccaaaccttcaattaaccgtctcgttatcatcgttctcgatactctcatgtactcaacact----cgtcgatcgca---accaccattaccaattt 461  Q
    |||||||||||| |||||||||||||||||||||||||||||||| |||| | ||||||||||||    |||| ||||||   |||| ||||||||||||    
T  51380273 tggaccaaacctgcaattaaccgtctcgttatcatcgttctcgatgctcttaggtactcaacactcgtccgtccatcgcaactaccagcattaccaattt 51380174  T
Q  462 accattaattaactgtgttatgctatatttttaggtttgattttgttgctcccagtaccttctttcaaggttagtta 538  Q
     ||||||||||||  | || | || |  |||||||||||||||||||||||||||||||||||||||||||||||||    
T  51380173 tccattaattaac--tttttttctgt-gttttaggtttgattttgttgctcccagtaccttctttcaaggttagtta 51380100  T

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Target: chr4; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 146 - 312
Target Start/End: Original strand, 42965887 - 42966069
Alignment:
Q  146 ttgatgtgcaaataccatgtacaatcctatatttgttgtgccaat-atgtctttgaaacaaattaaagtcaattttgatatcttgtgttcttttt----- 239  Q
    |||||||||||||| ||||  || ||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| ||||| ||| ||||         
T  42965887 ttgatgtgcaaatatcatgggcagtcctatatttgttgtgccaatcatgtctttgaaacaaattaaagtcaatttagatagcttgtattcgtttttttta 42965986  T
Q  240 ----------aagtgttccatgtcattcattatattttgtcaaggaaaatgtttccattcatttagtatttgttctttttatt 312  Q
              ||||||||||||||||| |||||||||||||||| ||||| ||| ||||||| |||||||||| |||||||||    
T  42965987 ggggagatagaagtgttccatgtcatttattatattttgtcaagaaaaatattttcattcatctagtatttgtcctttttatt 42966069  T

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Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 1505819 - 1505883
Alignment:
Q  1 ttaccattgaaactgttgttttacgtagtgtagccatatgagatgtttaattattttattttcat 65  Q
    |||| ||||||||||||||||| |||||||| || |||||||||| |||||||||||||||||||    
T  1505819 ttactattgaaactgttgttttgcgtagtgttgctatatgagatgcttaattattttattttcat 1505883  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 44142043 - 44142102
Alignment:
Q  1 ttaccattgaaactgttgttttacgtagtgtagccatatgagatgtttaattattttatt 60  Q
    ||||||||||||||||||||||||| ||||| || ||||||| || ||||||||||||||    
T  44142043 ttaccattgaaactgttgttttacgcagtgtcgctatatgaggtgcttaattattttatt 44142102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 44129416 - 44129480
Alignment:
Q  1 ttaccattgaaactgttgttttacgtagtgtagccatatgagatgtttaattattttattttcat 65  Q
    |||| ||||||||||||||||| || ||||| || ||||||| || |||||||||||||||||||    
T  44129416 ttactattgaaactgttgttttgcgcagtgtcgctatatgaggtgcttaattattttattttcat 44129480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 44133621 - 44133685
Alignment:
Q  1 ttaccattgaaactgttgttttacgtagtgtagccatatgagatgtttaattattttattttcat 65  Q
    |||||||||||||||||||||| || ||| | || ||||||| || ||| |||||||||||||||    
T  44133621 ttaccattgaaactgttgttttgcgaagtatcgctatatgaggtgcttatttattttattttcat 44133685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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