View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20099_low_8 (Length: 538)
Name: NF20099_low_8
Description: NF20099
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20099_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 490; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 490; E-Value: 0
Query Start/End: Original strand, 1 - 522
Target Start/End: Original strand, 54033829 - 54034350
Alignment:
| Q |
1 |
aagaaattgagagatgttcttaacaatagacctatagggatgcaaaagtggatacccttaggtgataagagacacaacaattgttgactggctcaacaag |
100 |
Q |
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| T |
54033829 |
aagaaattgagagatgttcttaacaatagacctatagggatgcaaaagtggacacccttaggtgataagagacacaacaattgttgactggctcaacaag |
54033928 |
T |
|
| Q |
101 |
aagatgttctcaagtcttttatctcgcctacttgaaggggatgctcagagttccttcataaggataggacaatatgatgccaatttcatagaaaaactcc |
200 |
Q |
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| T |
54033929 |
aagatgttctcaagtcttttatctcgcctacttgaaggggatgctcagagttccttcataaggatgggacaatatgatgccaatttcatagaaaaactcc |
54034028 |
T |
|
| Q |
201 |
ctcacattatgaactgcaaagcctccgccaactcctgatttcaaacctccctggtagccatatcacgcaaaatcattccaaacatatgagccttcatgca |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54034029 |
ctcacattatgaactgcaaagcctccgccaactcctgatttcaaacctctctagtagccatatcacgcaaaatcattccaaacatatgagccttcatgca |
54034128 |
T |
|
| Q |
301 |
ttaactgcttctttttctgactttaggaaataagccaaaaccataccgatcgaacttgctctacaaaacttgtacagtaaggcacatggatcggttaacc |
400 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54034129 |
ttagctgcttctttttctgactttaggaaataagccaaaaccataccgatcgaacttgctctacaaaacttgtacagtaaggcacatggatcggttaacc |
54034228 |
T |
|
| Q |
401 |
cattctagactaattacatgcggaaggctttgttacaagtgtgcaccattttgaaccctaatccaccttacaacctaggcctacacatttttgtttaaaa |
500 |
Q |
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| T |
54034229 |
cattctagactaattacatgcggaaggctttgtcataagtctgcaccattttgaaccctaatccaccttacaacctaggcctacacatttttgtttaaaa |
54034328 |
T |
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| Q |
501 |
aatttctcacaaaagtagaaat |
522 |
Q |
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|||||||||||||||||||||| |
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| T |
54034329 |
aatttctcacaaaagtagaaat |
54034350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 309 - 426
Target Start/End: Original strand, 31780484 - 31780598
Alignment:
| Q |
309 |
ttctttttctgactttaggaaataagccaaaaccataccgatcgaacttgctctacaaaacttgtacagtaaggcacatggatcggttaacccattctag |
408 |
Q |
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||||||||||||| |||| | ||||| ||||||||||| ||| ||| ||||||||||||||||||| |||||||||||||||||| | | ||||||| |
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| T |
31780484 |
ttctttttctgacattagcatataagtcaaaaccatactgat---actggctctacaaaacttgtacaataaggcacatggatcggtcagcatattctag |
31780580 |
T |
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| Q |
409 |
actaattacatgcggaag |
426 |
Q |
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||||||| |||| ||||| |
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| T |
31780581 |
actaatttcatgtggaag |
31780598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 310 - 395
Target Start/End: Original strand, 2243738 - 2243819
Alignment:
| Q |
310 |
tctttttctgactttaggaaataagccaaaaccataccgatcgaacttgctctacaaaacttgtacagtaaggcacatggatcggt |
395 |
Q |
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||||||||||||||||||| | ||| ||||||||||| ||| ||||||||| ||||| ||||||| |||||||||||||||||| |
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| T |
2243738 |
tctttttctgactttaggatacaagtcaaaaccatactgat---acttgctctgcaaaa-ttgtacaataaggcacatggatcggt |
2243819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 262 - 303
Target Start/End: Original strand, 2243678 - 2243719
Alignment:
| Q |
262 |
atcacgcaaaatcattccaaacatatgagccttcatgcatta |
303 |
Q |
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|||| ||||||| ||| ||||||||||||||||||||||||| |
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| T |
2243678 |
atcatgcaaaattatttcaaacatatgagccttcatgcatta |
2243719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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