View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20099_low_9 (Length: 518)
Name: NF20099_low_9
Description: NF20099
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20099_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 441; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 15 - 507
Target Start/End: Complemental strand, 3566244 - 3565752
Alignment:
| Q |
15 |
actttcatctgaaaaccatcactatcaatgacttgtaaggtgtttgcttcaggaacttttctaaggtttgtaaaaaacgtgtatctgcatctttattttc |
114 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3566244 |
actttcatatgaaaaccatcactatcaatgacttgtaaggtgtttgctacaggaacttttctaaggtttgtaaaaaacgtgtatctgcatctttattttc |
3566145 |
T |
|
| Q |
115 |
cacaatgttggcccatgagtttttaagaaagtctatatccttctggactatgtcaggagtggacaaaggttgtgtaatctacttttcatcctcatcttct |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| |
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| T |
3566144 |
cacaatgttggcccatgagtttttaagaaagtctatatccttctggactatgtcaggagtggacaaaggttgtgtaatctgctcttcatcctcatcttct |
3566045 |
T |
|
| Q |
215 |
tcattatggtcttgtgttgcatcgacaaaggaaccctacgtgctagtatcatcttgcgcattcacatctaagtctccaacataattaacttgaatgttgg |
314 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
3566044 |
tcattatggtcttgtgttgcatcgacaaaggaaccttacgtgctagtatcatcttgcgcattcacatctaagtctccaacagaattaacttgaatgttgg |
3565945 |
T |
|
| Q |
315 |
cctttatttccacttctatttgcaaatcttgggcctttaacagttcagcaggtgaagtgtttttgtcaggagtcttcacattagactgcacctcctcttg |
414 |
Q |
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| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3565944 |
catttatttccacttctatttgcaaatcttgggcctttaagagttcagcaggtgaagtgtttttgtcaggagtcttcacattagactgcacctcctcttg |
3565845 |
T |
|
| Q |
415 |
ttccttatcattcttatcatttccaggtaattcctcaacattgataacttctttctcaacattgattacttccttacctttacccaatattct |
507 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| || |||||| |
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| T |
3565844 |
ttccttatcattcttatcatttccagccaattcctcaacattgataacttctttctcgacattgattacttccttacctttactcagtattct |
3565752 |
T |
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