View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2009_low_10 (Length: 263)
Name: NF2009_low_10
Description: NF2009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2009_low_10 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 191; Significance: 1e-104; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 42 - 244
Target Start/End: Complemental strand, 5942697 - 5942495
Alignment:
| Q |
42 |
ctttctccaaacacaacctcaacttctccactttctccttcaccacttcatcacttgccactcctccaaaagtcaccaccccatatttcttcccaccttc |
141 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5942697 |
ctttctccaaacacaacctcaacttctccactttctccttcaccacttcatcacttgccactcctccaaaagtcaccaccccatatttcttcccaccttc |
5942598 |
T |
|
| Q |
142 |
ttctcttatcacaaccctctcatcaataggcttaggtacttcctctactttttcatacatagaaggcaaagtaaactgcatagtcaccatcttgttcatc |
241 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
5942597 |
ttctcttatcacaaccctctcatcaataggcttaggtacttcctctacttttaaatacatagaaggcaaagtaaactgcatagtcaccatcttgttcttc |
5942498 |
T |
|
| Q |
242 |
tca |
244 |
Q |
| |
|
||| |
|
|
| T |
5942497 |
tca |
5942495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 45 - 245
Target Start/End: Complemental strand, 5951498 - 5951298
Alignment:
| Q |
45 |
tctccaaacacaacctcaacttctccactttctccttcaccacttcatcacttgccactcctccaaaagtcaccaccccatatttcttcccaccttcttc |
144 |
Q |
| |
|
||||||||| || ||||||||||||||| ||||||||||||||||||||||| ||||| || | ||| ||||||| ||||||||| || ||||||| || |
|
|
| T |
5951498 |
tctccaaactcagcctcaacttctccaccttctccttcaccacttcatcactagccacaccactaaacttcaccactccatatttcctctcaccttcctc |
5951399 |
T |
|
| Q |
145 |
tcttatcacaaccctctcatcaataggcttaggtacttcctctactttttcatacatagaaggcaaagtaaactgcatagtcaccatcttgttcatctca |
244 |
Q |
| |
|
||||||||||||||| |||||| | ||||||||| |||| ||| |||||||||| |||| |||||| |||||||||||||||||||||||||| ||||| |
|
|
| T |
5951398 |
tcttatcacaaccctttcatcagttggcttaggtgcttcttctgctttttcataactagatggcaaaataaactgcatagtcaccatcttgttcctctca |
5951299 |
T |
|
| Q |
245 |
c |
245 |
Q |
| |
|
| |
|
|
| T |
5951298 |
c |
5951298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University