View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2009_low_11 (Length: 251)
Name: NF2009_low_11
Description: NF2009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2009_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 38818526 - 38818287
Alignment:
| Q |
1 |
gtcttgctacacgacacgagtctagggtgaagttgaagcagacacggtcaagtaaagtcgactttacaagtgattcaacataccatatctacggatggaa |
100 |
Q |
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| T |
38818526 |
gtcttgctacacgacacgagtctagggtgaagttgaagcagacacggtcaagtaaagtcgactttacaagtgattcaacataccatatctacggatggaa |
38818427 |
T |
|
| Q |
101 |
ataaaaaaggagaactccgtgcctctttaccatctcattgatgcacatctcggcgagttttgcgaaagtcgtgcgggtcttgaatgggattaggaatcta |
200 |
Q |
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| T |
38818426 |
ataaaaaaggagaactccgtgcctctttaccatcttattgatgcacatctcggcgagtttcgcgaaagtcgtgcgggtcttgaatgggattaggaatcta |
38818327 |
T |
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| Q |
201 |
ttttagtattaactgaatttcggagggagttccaattcat |
240 |
Q |
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| T |
38818326 |
ttttagtattaactgaatttcggagggagttccaattcat |
38818287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 59; Significance: 4e-25; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 162 - 240
Target Start/End: Original strand, 12363037 - 12363115
Alignment:
| Q |
162 |
gcgaaagtcgtgcgggtcttgaatgggattaggaatctattttagtattaactgaatttcggagggagttccaattcat |
240 |
Q |
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| T |
12363037 |
gcgaaactcgtgcgggtcttgaatgggattgggaatcaattttagtattaaccgaatttcggagggggttccaattcat |
12363115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 186
Target Start/End: Complemental strand, 12363046 - 12363014
Alignment:
| Q |
154 |
cgagttttgcgaaagtcgtgcgggtcttgaatg |
186 |
Q |
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| T |
12363046 |
cgagtttcgcgaaagtcgtgcgggtcttgaatg |
12363014 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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