View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2009_low_1_N (Length: 474)
Name: NF2009_low_1_N
Description: NF2009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2009_low_1_N |
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Alignment Details
Target: chr1 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 16 - 382
Target Start/End: Original strand, 50015096 - 50015461
Alignment:
| Q |
16 |
attgaataggcaacggtgataactgcaaatcaaaaaggtgggataatctttggttaacttaatttaataatatcgacctcattttcaccgaaaaaattca |
115 |
Q |
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| T |
50015096 |
attgaataggcaacggtgataactgcaaatcaaaaaggtgggataatctttggttaacttaatttaataatatcgacctcattttcaccgaaaaaattca |
50015195 |
T |
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| Q |
116 |
ttgcattagacccacataaagagaaacgggctagatgaagtgtttgactttgttctagttggatt-ggagctacttggtacttgccccattacgttctcc |
214 |
Q |
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| T |
50015196 |
ttgcattagacccacataaagagaaacgggctagatgaagtgtttgactttgttctagttggattgggagctacttggtacttgccccattacgttctcc |
50015295 |
T |
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| Q |
215 |
caagggcgagattttttgtcgttttgtcccaaattagtgtcaagaaattatggatctgttttagccaaaatttctattagtgtcaagaaaatatggaatt |
314 |
Q |
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| T |
50015296 |
caagggcgagattttttgtcgttttgtcccaaattagtgtcaagaaattatggatctgttttagccaaaatttctattagtgtcaagaaaatatggaatt |
50015395 |
T |
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| Q |
315 |
gccgattaactattcgtttcatttcattactacaaagtttttgattattttaccactccttatatttg |
382 |
Q |
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| T |
50015396 |
gccgattaactattcgttccatttcattactataaag--tttgattattttaccactccttatatttg |
50015461 |
T |
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