View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2009_low_4 (Length: 352)
Name: NF2009_low_4
Description: NF2009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2009_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 278; Significance: 1e-155; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 34 - 323
Target Start/End: Original strand, 40059602 - 40059891
Alignment:
| Q |
34 |
atgaaatggatttttgcagtatgattttgatgagaggaaggatttagtgaaatttgtgaaggcagtggctgaggcgggactatatgtgcatctccgcatc |
133 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40059602 |
atgaaatggatttttgcagtatgattttgatgggaggaaggatttagtgaaatttgtgaaggcagtggctgaggcgggactatatgtgcatctccgcatc |
40059701 |
T |
|
| Q |
134 |
ggtccatatgtttgtgctgaatggaactatgggtaaagtttggttgggaatttatgtgtgatatttttctggggtgttcatctaatcgagggctttaact |
233 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40059702 |
ggtccatatgtttgtgctgaatggaactatgggtaaagtttggttggtaatttatgtgtgatatttttctggggtgttcatctaatcgagggctttaact |
40059801 |
T |
|
| Q |
234 |
tcttaacagtggtttccctctttggcttcacttcattcccgggattaagttccgaactgataatgaaccatttaaggtagaggtaaccat |
323 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40059802 |
tcttaacagtggtttccctctttggcttcacttcattccggggattaagttccgaactgataatgaaccatttaaggtagaggtaaccat |
40059891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 34 - 313
Target Start/End: Original strand, 40077684 - 40077961
Alignment:
| Q |
34 |
atgaaatggatttttgcagtatgattttgatgagaggaaggatttagtgaaatttgtgaaggcagtggctgaggcgggactatatgtgcatctccgcatc |
133 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| ||| |
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| T |
40077684 |
atgaaatggatttttgcagtatgattttgatgggaggaaggatttagtgaaatttgtaaaggcagtggctgaggcaggactatatgtgcatctccggatc |
40077783 |
T |
|
| Q |
134 |
ggtccatatgtttgtgctgaatggaactatgggtaaagtttggttgggaatttatgtgtgatatttttctggggtgttca--tctaatcgagggctttaa |
231 |
Q |
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||||||||||| ||||||||||||||||| |||||||||||||| ||| ||||| |||||||||| |||||||| |||||| ||||||||||| |
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| T |
40077784 |
ggtccatatgtgtgtgctgaatggaactacgggtaaagtttggt----cctttctgtgtattatttttctgtggtgttcatgtctaattgagggctttaa |
40077879 |
T |
|
| Q |
232 |
cttcttaacagtggtttccctctttggcttcacttcattcccgggattaagttccgaactgataatgaaccatttaaggtag |
313 |
Q |
| |
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|||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||| |
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| T |
40077880 |
cttcttgacagtggtttccctctttggcttcacttcattccagggattaagttccgaactgacaatgaaccatttaaggtag |
40077961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 181; E-Value: 9e-98
Query Start/End: Original strand, 34 - 312
Target Start/End: Original strand, 40085489 - 40085765
Alignment:
| Q |
34 |
atgaaatggatttttgcagtatgattttgatgagaggaaggatttagtgaaatttgtgaaggcagtggctgaggcgggactatatgtgcatctccgcatc |
133 |
Q |
| |
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|||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||| ||||| |||||||| || ||||||||||||||||| || |
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| T |
40085489 |
atgaaatggatttttgcagtatgattttgatgggaggaaggatttggtgaaatttgtgaaagcagtagctgaggcaggtctatatgtgcatctccggatt |
40085588 |
T |
|
| Q |
134 |
ggtccatatgtttgtgctgaatggaactatgggtaaagtttggttgggaatttatgtgtgatatttttctggggtgttca--tctaatcgagggctttaa |
231 |
Q |
| |
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||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| ||| |||| ||||||||| |||||| ||||||||||| |
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| T |
40085589 |
ggtccatatgtttgttctgaatggaactatgggtaaagtttggt----aatttatgtgtattatatttcgagggtgttcatgtctaattgagggctttaa |
40085684 |
T |
|
| Q |
232 |
cttcttaacagtggtttccctctttggcttcacttcattcccgggattaagttccgaactgataatgaaccatttaaggta |
312 |
Q |
| |
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|||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| |
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| T |
40085685 |
cttcttgacagtggtttccctctttggcttcacttcattccagggattaagttccgaactgacaatgaaccatttaaggta |
40085765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 64; Significance: 6e-28; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 214 - 321
Target Start/End: Complemental strand, 35052758 - 35052652
Alignment:
| Q |
214 |
tctaatcgagggctttaacttcttaacagtggtttccctctttggcttcacttcattcccgggattaagttccgaactgataatgaaccatttaaggtag |
313 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||| ||||||||| ||||||||||||| ||||||| ||||| ||| || |||||||||||||||||| |
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| T |
35052758 |
tctaattgagggctttaacttcttaacagtggttaacctctttggattcacttcattccagggattaggttccaaacagacaatgaaccatttaaggta- |
35052660 |
T |
|
| Q |
314 |
aggtaacc |
321 |
Q |
| |
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|||||||| |
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| T |
35052659 |
aggtaacc |
35052652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 61; Significance: 4e-26; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 195 - 312
Target Start/End: Complemental strand, 12735579 - 12735460
Alignment:
| Q |
195 |
tatttttctggggtgttcat--ctaatcgagggctttaacttcttaacagtggtttccctctttggcttcacttcattcccgggattaagttccgaactg |
292 |
Q |
| |
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|||||| ||||||| ||||| ||||| ||||||||||||||||||| ||||||| ||||||||| ||||||||||||| ||||||||||||| || | |
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| T |
12735579 |
tattttcctggggtcttcatttctaattgagggctttaacttcttaagagtggttaacctctttggattcacttcattccagggattaagttccaaatag |
12735480 |
T |
|
| Q |
293 |
ataatgaaccatttaaggta |
312 |
Q |
| |
|
| |||||||||||||||||| |
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| T |
12735479 |
acaatgaaccatttaaggta |
12735460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 195 - 312
Target Start/End: Complemental strand, 12798406 - 12798287
Alignment:
| Q |
195 |
tatttttctggggtgttcat--ctaatcgagggctttaacttcttaacagtggtttccctctttggcttcacttcattcccgggattaagttccgaactg |
292 |
Q |
| |
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|||||| ||||||| ||||| ||||| ||||||||||||||||||| ||||||| ||||||||| ||||||||||||| ||||||||||||| || | |
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| T |
12798406 |
tattttcctggggtcttcatttctaattgagggctttaacttcttaagagtggttaacctctttggattcacttcattccagggattaagttccaaatag |
12798307 |
T |
|
| Q |
293 |
ataatgaaccatttaaggta |
312 |
Q |
| |
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| |||||||||||||||||| |
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| T |
12798306 |
acaatgaaccatttaaggta |
12798287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 195 - 321
Target Start/End: Original strand, 53322735 - 53322862
Alignment:
| Q |
195 |
tatttttctggggtgttcat--ctaatcgagggctttaacttcttaacagtggtttccctctttggcttcacttcattcccgggattaagttccgaactg |
292 |
Q |
| |
|
|||||||||||||| ||||| ||||| ||||||||||||||||||| | ||||| |||||||| ||||||||||||| ||||||||||||| || | |
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| T |
53322735 |
tatttttctggggtcttcatttctaattgagggctttaacttcttaagattggttaacctctttgtattcacttcattccagggattaagttccaaatcg |
53322834 |
T |
|
| Q |
293 |
ataatgaaccatttaaggtagaggtaacc |
321 |
Q |
| |
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| |||||||||||||||||| |||||||| |
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| T |
53322835 |
acaatgaaccatttaaggta-aggtaacc |
53322862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 85 - 170
Target Start/End: Complemental strand, 22015910 - 22015825
Alignment:
| Q |
85 |
atttgtgaaggcagtggctgaggcgggactatatgtgcatctccgcatcggtccatatgtttgtgctgaatggaactatgggtaaa |
170 |
Q |
| |
|
||||||||||||||| || | || || |||||||||||||||| |||||||||||||| |||||||||||||| || ||||||| |
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| T |
22015910 |
atttgtgaaggcagtagcagcagcaggtttatatgtgcatctccggatcggtccatatgtgtgtgctgaatggaattacgggtaaa |
22015825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 238 - 315
Target Start/End: Complemental strand, 22015744 - 22015667
Alignment:
| Q |
238 |
aacagtggtttccctctttggcttcacttcattcccgggattaagttccgaactgataatgaaccatttaaggtagag |
315 |
Q |
| |
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|||||||||||||| |||||| | || || ||| | || ||||||||||||||| ||||||||||||| |||| |||| |
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| T |
22015744 |
aacagtggtttccccctttggttgcattttattgctggaattaagttccgaactaataatgaaccattcaaggcagag |
22015667 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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