View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2009_low_5 (Length: 331)
Name: NF2009_low_5
Description: NF2009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2009_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 328
Target Start/End: Complemental strand, 32183058 - 32182712
Alignment:
| Q |
1 |
ttattcaatacacctttgaaaactactgttaaatcataaacaacagattaccacatgtggaatcggcagcaattcatgtaaagctttgaggttatcagcg |
100 |
Q |
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| T |
32183058 |
ttattcaatacacctttgaaaactaatcttaaatcataaacaacagattaccacatgtggagtcggcagcaattcatgtaaagctttgaggttatcagca |
32182959 |
T |
|
| Q |
101 |
atacgttgcctgcgttgctatattcaaagagtacagggtaagaaagaaacaaaattgtgttgatgaattggaataagattattaactagttgacaagagc |
200 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
32182958 |
atacgttgcctgcgttgctatattcaaagagtacacggtaagaaagaaacaaaattgtgttgatgaattggaataagattgttaactagttgacaagagc |
32182859 |
T |
|
| Q |
201 |
-----atagttttgaatttaatg--------------atatatctgcattttgaatgtggccgttatgattttatcagagatggaaaacgttttacttac |
281 |
Q |
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| T |
32182858 |
atagcatagtattgaacttaatgatatcatatgtggtatatatctgcattttgaatgtggccgttatgattttatcagagatagaaaaccttttacttac |
32182759 |
T |
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| Q |
282 |
acggtcactgtaacgtgttttctcacttttctgttctgtggtgctgc |
328 |
Q |
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| T |
32182758 |
acggtcactgtaacgtgttttctcacttttctgttttgtggagctgc |
32182712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 287 - 328
Target Start/End: Complemental strand, 51397539 - 51397498
Alignment:
| Q |
287 |
cactgtaacgtgttttctcacttttctgttctgtggtgctgc |
328 |
Q |
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||||||||||||||||||||||||||| || |||||| |||| |
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| T |
51397539 |
cactgtaacgtgttttctcacttttctattttgtggtactgc |
51397498 |
T |
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